U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    Speer4c1 spermatogenesis associated glutamate (E)-rich protein 4C1 [ Mus musculus (house mouse) ]

    Gene ID: 100502967, updated on 27-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Speer4c1provided by MGI
    Official Full Name
    spermatogenesis associated glutamate (E)-rich protein 4C1provided by MGI
    Primary source
    MGI:MGI:1914023
    See related
    Ensembl:ENSMUSG00000073208 AllianceGenome:MGI:1914023
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Speer4c; SPEER-4C; 4933431D05Rik
    Expression
    Biased expression in testis adult (RPKM 10.8) and ovary adult (RPKM 1.3) See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Speer4c1 in Genome Data Viewer
    Location:
    5 A2; 5 6.52 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (15914503..15920711, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (15709505..15714298, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 30417 Neighboring gene spermatogenesis associated glutamate (E)-rich protein 4D Neighboring gene spermatogenesis associated glutamate (E)-rich protein 4C2 Neighboring gene STARR-seq mESC enhancer starr_12481 Neighboring gene spermatogenesis associated glutamate (E)-rich protein 4C, opposite strand transcript Neighboring gene STARR-positive B cell enhancer mm9_chr5:15203829-15204130 Neighboring gene STARR-seq mESC enhancer starr_12483 Neighboring gene RIKEN cDNA 4930519H02 gene Neighboring gene STARR-seq mESC enhancer starr_12484 Neighboring gene predicted gene, 52852

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. SPEER--a new family of testis-specific genes from the mouse. Spiess AN, et al. Biol Reprod, 2003 Jun. PMID 12606357
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    spermatogenesis associated glutamate (E)-rich protein 4c
    Names
    sperm-associated glutamate (E)-rich protein 4c
    spermatogenesis associated glutamate (E)-rich protein 4C
    spermatogenic-associated glutamate (E)-rich protein 4c

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001281511.1 → NP_001268440.1  spermatogenesis associated glutamate (E)-rich protein 4c

      Status: VALIDATED

      Source sequence(s)
      AC117685, AK006011, BB015819
      Consensus CDS
      CCDS59669.1
      UniProtKB/TrEMBL
      G3UXD1, Q8C5Y0
      Related
      ENSMUSP00000133641.2, ENSMUST00000095005.12
      Conserved Domains (1) summary
      pfam04822
      Location:52 → 133
      Takusan; Takusan

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      15914503..15920711 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006535609.4 → XP_006535672.1  spermatogenesis associated glutamate (E)-rich protein 4c isoform X1

      Conserved Domains (1) summary
      pfam04822
      Location:50 → 122
      Takusan
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools