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    PHSY_002547 carbamoyl-phosphate synthase [ Pseudozyma hubeiensis SY62 ]

    Gene ID: 24107840, updated on 18-Sep-2024

    Summary

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    Gene symbol
    PHSY_002547
    Gene description
    carbamoyl-phosphate synthase
    Locus tag
    PHSY_002547
    Gene type
    protein coding
    RNA name
    carbamoyl-phosphate synthase
    RefSeq status
    PROVISIONAL
    Organism
    Pseudozyma hubeiensis SY62 (strain: SY62)
    Lineage
    Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; mitosporic Ustilaginaceae; Pseudozyma
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    Genomic context

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    See PHSY_002547 in Genome Data Viewer
    Exon count:
    1

    NW_012133806.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene golgi membrane protein Neighboring gene esterase Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_012133806.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Draft Genome Sequence of the Basidiomycetous Yeast-Like Fungus Pseudozyma hubeiensis SY62, Which Produces an Abundant Amount of the Biosurfactant Mannosylerythritol Lipids. Konishi M, et al. Genome Announc, 2013 Jun 27. PMID 23814110, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in 'de novo' pyrimidine nucleobase biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in L-arginine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glutamine metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of carbamoyl-phosphate synthase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    carbamoyl-phosphate synthase
    XP_012188561.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_012133806.1 Reference assembly

      Range
      84225..85634
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012333171.1 → XP_012188561.1  carbamoyl-phosphate synthase [Pseudozyma hubeiensis SY62]

      See identical proteins and their annotated locations for XP_012188561.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      R9P1D2
      Conserved Domains (3) summary
      cd01744
      Location:232 → 423
      GATase1_CPSase; Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II
      COG0505
      Location:37 → 432
      CarA; Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism, Nucleotide transport and metabolism]
      pfam00988
      Location:40 → 184
      CPSase_sm_chain; Carbamoyl-phosphate synthase small chain, CPSase domain
    Nucleotide Protein
    Heading Accession and Version

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