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    UMAG_01123 Elongator subunit IKI3 [ Mycosarcoma maydis (corn smut) ]

    Gene ID: 23562232, updated on 4-Dec-2024

    Summary

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    Gene symbol
    UMAG_01123
    Gene description
    Elongator subunit IKI3
    Locus tag
    UMAG_01123
    See related
    FungiDB:UMAG_01123; VEuPathDB:UMAG_01123
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mycosarcoma maydis (strain: 521, culture-collection: FGSC:9021, type-material: neotype of Uredo maydis)
    Lineage
    Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Mycosarcoma
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    Genomic context

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    See UMAG_01123 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_026479.1 (948503..952987, complement)

    Chromosome 2 - NC_026479.1Genomic Context describing neighboring genes Neighboring gene putative proteasome regulatory particle lid subunit RPN8 Neighboring gene uncharacterized protein Neighboring gene cAMP-dependent protein kinase catalytic subunit Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_026479.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis. Kämper J, et al. Nature, 2006 Nov 2. PMID 17080091
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables tRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of elongator holoenzyme complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Elongator subunit IKI3
    XP_011387076.1
    • related to IKI3 - Subunit of RNA polymerase II elongator histone acetyltransferase complex

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_026479.1 Reference assembly

      Range
      948503..952987 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011388774.1 → XP_011387076.1  Elongator subunit IKI3 [Mycosarcoma maydis]

      See identical proteins and their annotated locations for XP_011387076.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0D1CXX4
      Conserved Domains (2) summary
      COG5290
      Location:114 → 1388
      COG5290; IkappaB kinase complex, IKAP component [Transcription]
      pfam04762
      Location:1 → 1084
      IKI3; IKI3 family
    Nucleotide Protein
    Heading Accession and Version

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