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    LOC105121796 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [ Populus euphratica (Euphrates poplar) ]

    Gene ID: 105121796, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC105121796
    Gene description
    1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus euphratica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC105121796 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    100 current PopEup_1.0 (GCF_000495115.1) Unplaced Scaffold NW_011499852.1 (1278684..1296229, complement)

    NW_011499852.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105121794 Neighboring gene growth-regulating factor 3 Neighboring gene pleiotropic drug resistance protein 2-like Neighboring gene protein kinase G11A

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_011499852.1 Unplaced Scaffold Reference PopEup_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 1,4-alpha-glucan branching enzyme activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cation binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glycogen biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in starch metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus euphratica Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference PopEup_1.0 Primary Assembly

    Genomic

    1. NW_011499852.1 Reference PopEup_1.0 Primary Assembly

      Range
      1278684..1296229 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011020597.1 → XP_011018899.1  1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic

      UniProtKB/TrEMBL
      A0AAJ6XHI6
      Conserved Domains (4) summary
      cd02854
      Location:199 → 292
      E_set_GBE_euk_N; N-terminal Early set domain associated with the catalytic domain of eukaryotic glycogen branching enzyme (also called 1,4 alpha glucan branching enzyme)
      cd11321
      Location:296 → 711
      AmyAc_bac_euk_BE; Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes
      PLN02447
      Location:104 → 833
      PLN02447; 1,4-alpha-glucan-branching enzyme
      pfam02806
      Location:729 → 824
      Alpha-amylase_C; Alpha amylase, C-terminal all-beta domain
    Nucleotide Protein
    Heading Accession and Version

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