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    LOC104955693 RDS/peripherin-like protein xRDS35 [ Notothenia coriiceps (black rockcod) ]

    Gene ID: 104955693, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC104955693
    Gene description
    RDS/peripherin-like protein xRDS35
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Notothenia coriiceps
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Nototheniidae; Notothenia
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    Genomic context

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    See LOC104955693 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current NC01 (GCF_000735185.1) Unplaced Scaffold NW_011357369.1 (3825261..3829436)

    NW_011357369.1Genomic Context describing neighboring genes Neighboring gene mono-ADP ribosylhydrolase 1 Neighboring gene leucine-rich repeat transmembrane protein FLRT1-like Neighboring gene uncharacterized LOC104955692 Neighboring gene girdin-like Neighboring gene SCY1-like, kinase-like 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_011357369.1 Unplaced Scaffold Reference NC01 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in visual perception IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RDS/peripherin-like protein xRDS35

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Notothenia coriiceps Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NC01 Primary Assembly

    Genomic

    1. NW_011357369.1 Reference NC01 Primary Assembly

      Range
      3825261..3829436
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010783080.1 → XP_010781382.1  RDS/peripherin-like protein xRDS35

      UniProtKB/TrEMBL
      A0A6I9NZM9
      Conserved Domains (2) summary
      cd03162
      Location:120 → 262
      peripherin_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), peripherin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
      pfam00335
      Location:20 → 288
      Tetraspannin; Tetraspanin family
    Nucleotide Protein
    Heading Accession and Version

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