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    LOC104294394 activated RNA polymerase II transcriptional coactivator p15-like [ Charadrius vociferus (killdeer) ]

    Gene ID: 104294394, updated on 3-Aug-2024

    Summary

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    Gene symbol
    LOC104294394
    Gene description
    activated RNA polymerase II transcriptional coactivator p15-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Charadrius vociferus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Charadriidae; Charadrius
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    Genomic context

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    See LOC104294394 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current ASM70802v2 (GCF_000708025.1) Unplaced Scaffold NW_009661376.1 (333550..337293)

    NW_009661376.1Genomic Context describing neighboring genes Neighboring gene sphingosine-1-phosphate receptor 4 Neighboring gene nicalin Neighboring gene CUGBP Elav-like family member 5 Neighboring gene hydroxysteroid 11-beta dehydrogenase 1 like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_009661376.1 Unplaced Scaffold Reference ASM70802v2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription initiation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    activated RNA polymerase II transcriptional coactivator p15-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Charadrius vociferus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM70802v2

    Genomic

    1. NW_009661376.1 Reference ASM70802v2

      Range
      333550..337293
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009893994.1 → XP_009892296.1  activated RNA polymerase II transcriptional coactivator p15-like

      Conserved Domains (1) summary
      pfam02229
      Location:66 → 114
      PC4; Transcriptional Coactivator p15 (PC4)
    Nucleotide Protein
    Heading Accession and Version

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