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    RpL13 Ribosomal protein L13 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 34329, updated on 9-Dec-2024

    Summary

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    Official Symbol
    RpL13provided by FlyBase
    Official Full Name
    Ribosomal protein L13provided by FlyBase
    Primary source
    FLYBASE:FBgn0011272
    Locus tag
    Dmel_CG4651
    See related
    AllianceGenome:FB:FBgn0011272
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    anon-EST:fe1D1; bbc1; Bbc1; CG4651; Dmbbc1; Dmel\CG4651; L13; L13e; Rp L13; rpL13; Rpl13; RPL13
    Summary
    A structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Located in cytosolic ribosome. Is expressed in adult head and adult heart. Used to study congenital heart disease. Orthologous to human RPL13 (ribosomal protein L13). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See RpL13 in Genome Data Viewer
    Location:
    30F3-30F3; 2-38 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (9967313..9968645)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (9967313..9968645)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene antisense RNA:CR43683 Neighboring gene uncharacterized protein Neighboring gene DNA replication-related element factor Neighboring gene long non-coding RNA:CR13130 Neighboring gene big brain Neighboring gene uncharacterized protein Neighboring gene Sister of Yb

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Drosophila melanogaster homologue of the human BBC1 gene is highly expressed during embryogenesis. Helps NR, et al. Gene, 1995 Sep 11. PMID 7557437
    2. Modified ribosome profiling reveals high abundance of ribosome protected mRNA fragments derived from 3' untranslated regions. Miettinen TP, et al. Nucleic Acids Res, 2015 Jan. PMID 25550424, Free PMC Article
    3. Transcription control of a gene for Drosophila transcription factor, DREF by DRE and cis-elements conserved between Drosophila melanogaster and virilis. Kwon E, et al. Gene, 2003 May 8. PMID 12758126
    4. Regulation of ribosome biogenesis by nucleostemin 3 promotes local and systemic growth in Drosophila. Hartl TA, et al. Genetics, 2013 May. PMID 23436180, Free PMC Article
    5. Early evolution of the bilateria. Hausdorf B. Syst Biol, 2000 Mar. PMID 12116476

    See all (75) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome HDA PubMed 
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of ribosome TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoplasmic translation IC
    Inferred by Curator
    more info
    		 PubMed 
    involved_in cytoplasmic translation TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of cytosolic large ribosomal subunit TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in cytosolic ribosome HDA PubMed 
    located_in cytosolic ribosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ribosomal protein L13
    Names
    CG4651-PA
    CG4651-PB
    CG4651-PC
    RpL13-PA
    RpL13-PB
    RpL13-PC
    anon-fast-evolving-1D1
    r-protein L13

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      9967313..9968645
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_078806.4 → NP_523530.1  ribosomal protein L13, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_523530.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A4V0I6, B7FNN5, P41126, Q9VL55
      UniProtKB/TrEMBL
      M9PFF0
      Related
      FBpp0079484
      Conserved Domains (1) summary
      pfam01294
      Location:7 → 187
      Ribosomal_L13e; Ribosomal protein L13e

    2. NM_001273383.2 → NP_001260312.1  ribosomal protein L13, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001260312.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A4V0I6, B7FNN5, P41126, Q9VL55
      UniProtKB/TrEMBL
      M9PFF0
      Conserved Domains (1) summary
      pfam01294
      Location:7 → 187
      Ribosomal_L13e; Ribosomal protein L13e

    3. NM_001038802.2 → NP_001033891.1  ribosomal protein L13, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001033891.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A4V0I6, B7FNN5, P41126, Q9VL55
      UniProtKB/TrEMBL
      M9PFF0
      Conserved Domains (1) summary
      pfam01294
      Location:7 → 187
      Ribosomal_L13e; Ribosomal protein L13e
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    M9PFF0 M9PFF0
    P41126.1 P41126

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