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    CG3558 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 48421, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG3558provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0025681
    Locus tag
    Dmel_CG3558
    See related
    AllianceGenome:FB:FBgn0025681
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    BEST:LD23852; c4.3; Dmel\CG3558; LD23852
    Summary
    Orthologous to several human genes including FHIP1B (FHF complex subunit HOOK interacting protein 1B). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG3558 in Genome Data Viewer
    Location:
    23C4-23C4; 2-8 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (2992870..2998726)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (2992870..2998726)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene Chromodomain-helicase-DNA-binding protein 1 Neighboring gene Bem46 Neighboring gene okra Neighboring gene Ccdc85 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. ASPP proteins discriminate between PP1 catalytic subunits through their SH3 domain and the PP1 C-tail. Bertran MT, et al. Nat Commun, 2019 Feb 15. PMID 30770806, Free PMC Article
    2. Notch ligand activity is modulated by glycosphingolipid membrane composition in Drosophila melanogaster. Hamel S, et al. J Cell Biol, 2010 Feb 22. PMID 20176925, Free PMC Article
    3. Alcohol Causes Lasting Differential Transcription in Drosophila Mushroom Body Neurons. Petruccelli E, et al. Genetics, 2020 May. PMID 32132098, Free PMC Article
    4. DENR-MCT-1 promotes translation re-initiation downstream of uORFs to control tissue growth. Schleich S, et al. Nature, 2014 Aug 14. PMID 25043021, Free PMC Article
    5. okra and spindle-B encode components of the RAD52 DNA repair pathway and affect meiosis and patterning in Drosophila oogenesis. Ghabrial A, et al. Genes Dev, 1998 Sep 1. PMID 9732269, Free PMC Article

    See all (30) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG3558-PA
    CG3558-PB
    CG3558-PC
    CG3558-PD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      2992870..2998726
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001273047.1 → NP_001259976.1  uncharacterized protein Dmel_CG3558, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001259976.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9PB19
      Conserved Domains (2) summary
      cl17507
      Location:872 → 966
      LbR-like; Left-handed beta-roll, including virulence factors and various other proteins
      pfam10257
      Location:101 → 452
      RAI16-like; Retinoic acid induced 16-like protein

    2. NM_001144305.2 → NP_001137777.1  uncharacterized protein Dmel_CG3558, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001137777.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9VQK0
      Conserved Domains (2) summary
      cl17507
      Location:898 → 979
      LbR-like; Left-handed beta-roll, including virulence factors and various other proteins
      pfam10257
      Location:101 → 452
      RAI16-like; Retinoic acid induced 16-like protein

    3. NM_143807.3 → NP_652064.2  uncharacterized protein Dmel_CG3558, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_652064.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B7Z000, Q8IPZ4, Q95SN7, Q9VQK0
      Related
      FBpp0077329
      Conserved Domains (2) summary
      cl17507
      Location:890 → 971
      LbR-like; Left-handed beta-roll, including virulence factors and various other proteins
      pfam10257
      Location:101 → 444
      RAI16-like; Retinoic acid induced 16-like protein

    4. NM_164519.2 → NP_722866.1  uncharacterized protein Dmel_CG3558, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_722866.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9VQK0
      Related
      FBpp0077330
      Conserved Domains (2) summary
      cl17507
      Location:864 → 958
      LbR-like; Left-handed beta-roll, including virulence factors and various other proteins
      pfam10257
      Location:101 → 444
      RAI16-like; Retinoic acid induced 16-like protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    M9PB19 M9PB19
    Q9VQK0.1 Q9VQK0

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