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    TRAF-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835309, updated on 18-Sep-2024

    Summary

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    Official Full Name
    TRAF-like superfamily protein
    Primary source
    TAIR:AT5G52330
    Locus tag
    AT5G52330
    See related
    Araport:AT5G52330
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K24M7.6; K24M7_6
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    11
    Sequence:
    Chromosome: 5; NC_003076.8 (21247355..21250426, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) Neighboring gene cytochrome P450, family 96, subfamily A, polypeptide 4 Neighboring gene exocyst subunit exo70 family protein A2 Neighboring gene exocyst subunit exo70 family protein A3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001036985.1
    NM_124612.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TRAF-like superfamily protein
    NP_001032062.1
    • TRAF-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like superfamily protein (TAIR:AT1G04300.4); Has 369 Blast hits to 363 proteins in 50 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 47; Plants - 300; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
    NP_200046.1
    • TRAF-like superfamily protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: TRAF-like superfamily protein (TAIR:AT1G04300.1); Has 1080 Blast hits to 1018 proteins in 130 species: Archae - 0; Bacteria - 2; Metazoa - 66; Fungi - 144; Plants - 828; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      21247355..21250426 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344995.1 → NP_001331623.1  TRAF-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UKB2, A0A384L8N5, A0A654GAG6, Q9FHC7
      Conserved Domains (1) summary
      cd00121
      Location:19 → 142
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...

    2. NM_001344994.1 → NP_001331622.1  TRAF-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UKB2, A0A384L8N5, A0A654GAG6, Q9FHC7
      Conserved Domains (1) summary
      cd00121
      Location:19 → 142
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...

    3. NM_124612.3 → NP_200046.1  TRAF-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200046.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UKB2, A0A384L8N5, A0A654GAG6, Q9FHC7
      Conserved Domains (1) summary
      cd00121
      Location:19 → 142
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...

    4. NM_001036985.1 → NP_001032062.1  TRAF-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001032062.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654GAG6, F4KG56
      Conserved Domains (1) summary
      cd00121
      Location:2 → 91
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    Nucleotide Protein
    Heading Accession and Version

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