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    Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843961, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Primary source
    TAIR:AT1G76280
    Locus tag
    AT1G76280
    See related
    Araport:AT1G76280
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F15M4.22
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    14
    Sequence:
    Chromosome: 1; NC_003070.9 (28617577..28622777, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene DWD (DDB1-binding WD40 protein) hypersensitive to ABA 2 Neighboring gene O-fucosyltransferase family protein Neighboring gene AMP-dependent synthetase and ligase family protein Neighboring gene snRNP core protein SMD3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001036208.5
    NM_001198480.1
    NM_001334717.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Tetratricopeptide repeat (TPR)-like superfamily protein
    NP_001031285.4
    • Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G18940.1); Has 12686 Blast hits to 5224 proteins in 153 species: Archae - 1; Bacteria - 0; Metazoa - 27; Fungi - 31; Plants - 12255; Viruses - 0; Other Eukaryotes - 372 (source: NCBI BLink).
    NP_001185409.1
    • Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: genomes uncoupled 1 (TAIR:AT2G31400.1).
    NP_177755.3
    • Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: genomes uncoupled 1 (TAIR:AT2G31400.1); Has 14296 Blast hits to 5357 proteins in 164 species: Archae - 2; Bacteria - 0; Metazoa - 31; Fungi - 37; Plants - 13843; Viruses - 0; Other Eukaryotes - 383 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      28617577..28622777 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106278.5 → NP_177755.3  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177755.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SFW4, Q9SGQ6
      UniProtKB/TrEMBL
      A0A7G2E391
      Conserved Domains (3) summary
      PLN03218
      Location:406 → 636
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:527 → 554
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:527 → 570
      PPR_2; PPR repeat family

    2. NM_001334718.1 → NP_001322864.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AVF2, A0A654EPE8, A0A7G2E391
      Conserved Domains (3) summary
      PLN03218
      Location:340 → 668
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:559 → 586
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:559 → 602
      PPR_2; PPR repeat family

    3. NM_001036208.5 → NP_001031285.4  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031285.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WUT5, A0A7G2E391, B6EUA8
      Conserved Domains (4) summary
      TIGR00756
      Location:559 → 592
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:559 → 586
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:559 → 602
      PPR_2; PPR repeat family
      pfam13812
      Location:592 → 625
      PPR_3; Pentatricopeptide repeat domain

    4. NM_001334717.1 → NP_001322865.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W8A4, A0A1P8AVB2, A0A384LI95

    5. NM_001198480.1 → NP_001185409.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185409.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2E391, F4I2B7
      Conserved Domains (4) summary
      TIGR00756
      Location:555 → 588
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:555 → 582
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:555 → 598
      PPR_2; PPR repeat family
      pfam13812
      Location:588 → 621
      PPR_3; Pentatricopeptide repeat domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SGQ6.2

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