U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    AIG2L avirulence induced protein 2 like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 833968, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    AIG2L
    Official Full Name
    avirulence induced protein 2 like protein
    Primary source
    TAIR:AT5G39720
    Locus tag
    AT5G39720
    See related
    Araport:AT5G39720
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    avirulence induced gene 2 like protein; MKM21.1
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See AIG2L in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (15899618..15900667)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene lysine histidine transporter-like protein Neighboring gene AIG2-like (avirulence induced gene) family protein Neighboring gene ribosomal protein L5 B

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Solution structure of Arabidopsis thaliana protein At5g39720.1, a member of the AIG2-like protein family. Lytle BL, et al. Acta Crystallogr Sect F Struct Biol Cryst Commun, 2006 Jun 1. PMID 16754964, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_123334.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    avirulence induced protein 2 like protein
    NP_198788.1
    • avirulence induced gene 2 like protein (AIG2L); CONTAINS InterPro DOMAIN/s: Butirosin biosynthesis, BtrG-like (InterPro:IPR013024), AIG2-like (InterPro:IPR009288); BEST Arabidopsis thaliana protein match is: AIG2-like (avirulence induced gene) family protein (TAIR:AT5G39730.1); Has 287 Blast hits to 287 proteins in 90 species: Archae - 12; Bacteria - 68; Metazoa - 0; Fungi - 56; Plants - 104; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      15899618..15900667
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344301.1 → NP_001330763.1  avirulence induced protein 2 like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BBU1

    2. NM_123334.3 → NP_198788.1  avirulence induced protein 2 like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198788.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q58CN3, Q680A3, Q9FIX2
      UniProtKB/TrEMBL
      A0A178USH4, A0A5S9Y9D4, A0A654G6E7, A2RVP6
      Conserved Domains (1) summary
      pfam06094
      Location:12 → 124
      GGACT; Gamma-glutamyl cyclotransferase, AIG2-like
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FIX2.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools