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    Rplp0 ribosomal protein lateral stalk subunit P0 [ Rattus rattus (black rat) ]

    Gene ID: 116885424, updated on 18-Mar-2024

    Summary

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    Gene symbol
    Rplp0
    Gene description
    ribosomal protein lateral stalk subunit P0
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus rattus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Orthologs
    human mouse all
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    Genomic context

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    See Rplp0 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    100 current Rrattus_CSIRO_v1 (GCF_011064425.1) 16 NC_046169.1 (38264591..38267967, complement)

    Chromosome 16 - NC_046169.1Genomic Context describing neighboring genes Neighboring gene RAB35, member RAS oncogene family Neighboring gene GCN1 activator of EIF2AK4 Neighboring gene paxillin Neighboring gene 40S ribosomal protein S5-like Neighboring gene U4 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_046169.1 Chromosome 16 Reference Rrattus_CSIRO_v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The primary structure of rat ribosomal proteins P0, P1, and P2 and a proposal for a uniform nomenclature for mammalian and yeast ribosomal proteins. Wool IG, et al. Biochimie, 1991 Jul-Aug. PMID 1742361
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables large ribosomal subunit rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoplasmic translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ribosomal large subunit assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    60S acidic ribosomal protein P0

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Rattus rattus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rrattus_CSIRO_v1 Primary Assembly

    Genomic

    1. NC_046169.1 Reference Rrattus_CSIRO_v1 Primary Assembly

      Range
      38264591..38267967 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032886710.1 → XP_032742601.1  60S acidic ribosomal protein P0

      Conserved Domains (1) summary
      PTZ00135
      Location:1 → 269
      PTZ00135; 60S acidic ribosomal protein P0; Provisional
    Nucleotide Protein
    Heading Accession and Version

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