U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    Eva1b eva-1 homolog B [ Mus musculus (house mouse) ]

    Gene ID: 230752, updated on 27-Nov-2024

    Summary

    Official Symbol
    Eva1bprovided by MGI
    Official Full Name
    eva-1 homolog Bprovided by MGI
    Primary source
    MGI:MGI:1922063
    See related
    Ensembl:ENSMUSG00000050212 AllianceGenome:MGI:1922063
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Fam176b; 2610027C15Rik
    Summary
    Predicted to be located in membrane. Is expressed in several structures, including axial skeleton; embryo mesenchyme; gut; salivary gland primordium; and urinary system. Orthologous to human EVA1B (eva-1 homolog B). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in ovary adult (RPKM 54.5), lung adult (RPKM 53.5) and 23 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Eva1b in Genome Data Viewer
    Location:
    4 D2.2; 4 59.96 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (126039502..126043668)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (126145709..126149875)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E2713 Neighboring gene U7 snRNP-specific Sm-like protein LSM10 Neighboring gene serine/threonine kinase 40 Neighboring gene SH3 domain containing 21 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:125839584-125839767 Neighboring gene STARR-seq mESC enhancer starr_11390 Neighboring gene thyroid hormone receptor associated protein 3 Neighboring gene STARR-seq mESC enhancer starr_11391 Neighboring gene STARR-seq mESC enhancer starr_11392 Neighboring gene predicted gene, 25323

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 
    • Targeted (1) 

    General protein information

    Preferred Names
    protein eva-1 homolog B
    Names
    family with sequence similarity 176, member B
    protein FAM176B

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_172145.3NP_742157.1  protein eva-1 homolog B

      See identical proteins and their annotated locations for NP_742157.1

      Status: PROVISIONAL

      Source sequence(s)
      AK076006
      Consensus CDS
      CCDS18643.1
      UniProtKB/Swiss-Prot
      B1AW02, Q8K2Y3
      Related
      ENSMUSP00000101758.3, ENSMUST00000106152.3
      Conserved Domains (1) summary
      pfam14851
      Location:7162
      FAM176; FAM176 family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      126039502..126043668
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006503037.4XP_006503100.1  protein eva-1 homolog B isoform X1

      See identical proteins and their annotated locations for XP_006503100.1

      Conserved Domains (1) summary
      pfam14851
      Location:85214
      FAM176; FAM176 family
    2. XM_006503036.5XP_006503099.1  protein eva-1 homolog B isoform X1

      See identical proteins and their annotated locations for XP_006503099.1

      Conserved Domains (1) summary
      pfam14851
      Location:85214
      FAM176; FAM176 family
    3. XM_036164046.1XP_036019939.1  protein eva-1 homolog B isoform X2

      UniProtKB/Swiss-Prot
      B1AW02, Q8K2Y3
      Conserved Domains (1) summary
      pfam14851
      Location:7162
      FAM176; FAM176 family
    4. XM_006503040.5XP_006503103.1  protein eva-1 homolog B isoform X2

      See identical proteins and their annotated locations for XP_006503103.1

      UniProtKB/Swiss-Prot
      B1AW02, Q8K2Y3
      Conserved Domains (1) summary
      pfam14851
      Location:7162
      FAM176; FAM176 family
    5. XM_006503038.5XP_006503101.1  protein eva-1 homolog B isoform X2

      See identical proteins and their annotated locations for XP_006503101.1

      UniProtKB/Swiss-Prot
      B1AW02, Q8K2Y3
      Conserved Domains (1) summary
      pfam14851
      Location:7162
      FAM176; FAM176 family