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    TNFRSF21 TNF receptor superfamily member 21 [ Callithrix jacchus (white-tufted-ear marmoset) ]

    Gene ID: 100386273, updated on 8-Mar-2024

    Summary

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    Gene symbol
    TNFRSF21
    Gene description
    TNF receptor superfamily member 21
    See related
    Ensembl:ENSCJAG00000011904
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callithrix jacchus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
    Orthologs
    human mouse all
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    Genomic context

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    See TNFRSF21 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 4 NC_071445.1 (51857233..51937040, complement)
    105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 4 NC_048386.1 (52415800..52495624, complement)

    Chromosome 4 - NC_071445.1Genomic Context describing neighboring genes Neighboring gene adhesion G protein-coupled receptor F5 Neighboring gene adhesion G protein-coupled receptor F1 Neighboring gene uncharacterized LOC103792451 Neighboring gene uncharacterized LOC128931770 Neighboring gene polycomb complex protein BMI-1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in adaptive immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in humoral immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of B cell proliferation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of T cell proliferation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of myelination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neuron apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in oligodendrocyte apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tumor necrosis factor receptor superfamily member 21

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCalJa1.2.pat.X

    Genomic

    1. NC_071445.1 Reference mCalJa1.2.pat.X

      Range
      51857233..51937040 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002746620.6 → XP_002746666.1  tumor necrosis factor receptor superfamily member 21 isoform X1

      See identical proteins and their annotated locations for XP_002746666.1

      UniProtKB/TrEMBL
      F6QC41
      Related
      ENSCJAP00000021891.2
      Conserved Domains (3) summary
      cd08778
      Location:414 → 497
      Death_TNFRSF21; Death domain of tumor necrosis factor receptor superfamily member 21
      cd10583
      Location:53 → 211
      TNFRSF21; Tumor necrosis factor receptor superfamily member 21 (TNFRSF21), also known as death receptor (DR6)
      cl14633
      Location:594 → 654
      DD; Death Domain Superfamily of protein-protein interaction domains

    2. XM_008994545.4 → XP_008992793.1  tumor necrosis factor receptor superfamily member 21 isoform X2

      Conserved Domains (2) summary
      cd08778
      Location:414 → 497
      Death_TNFRSF21; Death domain of tumor necrosis factor receptor superfamily member 21
      cd10583
      Location:53 → 211
      TNFRSF21; Tumor necrosis factor receptor superfamily member 21 (TNFRSF21), also known as death receptor (DR6)
    Nucleotide Protein
    Heading Accession and Version

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