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    PTSG_11840 hypothetical protein [ Salpingoeca rosetta ]

    Gene ID: 16077211, updated on 14-Dec-2023

    Summary

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    Gene symbol
    PTSG_11840
    Gene description
    hypothetical protein
    Locus tag
    PTSG_11840
    Gene type
    protein coding
    RNA name
    uncharacterized protein
    RefSeq status
    PROVISIONAL
    Organism
    Salpingoeca rosetta (strain: ATCC 50818, culture-collection: ATCC:50818)
    Lineage
    Eukaryota; Choanoflagellida; Craspedida; Salpingoecidae; Salpingoeca
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    Genomic context

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    See PTSG_11840 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    30

    NW_004754929.1Genomic Context describing neighboring genes Neighboring gene tRNA-Tyr Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004754929.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables semaphorin receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in polysaccharide catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in semaphorin-plexin signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hypothetical protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_004754929.1 Reference assembly

      Range
      318268..359004
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004996562.1 → XP_004996619.1  uncharacterized protein PTSG_11840 [Salpingoeca rosetta]

      See identical proteins and their annotated locations for XP_004996619.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      F2U1B3
      Conserved Domains (11) summary
      smart00429
      Location:4496 → 4583
      IPT; ig-like, plexins, transcription factors
      cd00102
      Location:1935 → 2021
      IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
      cd00603
      Location:1328 → 1413
      IPT_PCSR; IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the ...
      TIGR04117
      Location:5335 → 5370
      Syntroph_Cxxx; Syntrophus aciditrophicus Cys-Xaa-Xaa-Xaa repeat radical SAM target protein
      cd00185
      Location:5639 → 5679
      TNFRSF; CRD2 [structural motif]
      pfam01833
      Location:2202 → 2283
      TIG; IPT/TIG domain
      pfam13948
      Location:5282 → 5336
      DUF4215; Domain of unknown function (DUF4215)
      pfam16070
      Location:6687 → 7014
      TMEM132; Transmembrane protein family 132
      cl15674
      Location:1506 → 1572
      IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
      cl21464
      Location:4899 → 5062
      cupin_like; Conserved domain found in cupin and related proteins
      cl22855
      Location:5597 → 5762
      TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)
    Protein Accession Links
    GenPept Link UniProtKB Link
    EGD81415.1

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