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    FATE1 fetal and adult testis expressed 1 [ Sus scrofa (pig) ]

    Gene ID: 396705, updated on 17-Aug-2024

    Summary

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    Official Symbol
    FATE1provided by VGNC
    Official Full Name
    fetal and adult testis expressed 1provided by VGNC
    Primary source
    VGNC:VGNC:88020
    See related
    Ensembl:ENSSSCG00000039345
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Also known as
    FATE
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    human all
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    Genomic context

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    See FATE1 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) X NC_010461.5 (123106086..123113178)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) Unplaced Scaffold NW_003613107.1 (150060..157665)

    Chromosome X - NC_010461.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100154249 Neighboring gene proline rich and Gla domain 3 Neighboring gene cyclic nucleotide gated channel subunit alpha 2 Neighboring gene gamma-aminobutyric acid type A receptor subunit epsilon Neighboring gene microRNA mir-224

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Human FATE is a novel X-linked gene expressed in fetal and adult testis. Olesen C, et al. Mol Cell Endocrinol, 2001 Nov 26. PMID 11694338
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of mitochondrial calcium ion concentration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in mitochondria-associated endoplasmic reticulum membrane contact site IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in mitochondrial outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    fetal and adult testis-expressed transcript protein homolog
    Names
    fetal and adult testis expressed transcript

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_213797.1 → NP_998962.1  fetal and adult testis-expressed transcript protein homolog

      See identical proteins and their annotated locations for NP_998962.1

      Status: PROVISIONAL

      Source sequence(s)
      AF345986
      UniProtKB/Swiss-Prot
      Q95LB4
      UniProtKB/TrEMBL
      A0A8D0TTU0
      Related
      ENSSSCP00000047449.1, ENSSSCT00000062322.3
      Conserved Domains (1) summary
      pfam05644
      Location:107 → 170
      Miff; Mitochondrial and peroxisomal fission factor Mff

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010461.5 Reference Sscrofa11.1 Primary Assembly

      Range
      123106086..123113178
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q95LB4.1 GenPept UniProtKB/Swiss-Prot:Q95LB4

    Gene LinkOut

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