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    Srrm1 Serine-arginine repetitive matrix 1 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 39483, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Srrm1provided by FlyBase
    Official Full Name
    Serine-arginine repetitive matrix 1provided by FlyBase
    Primary source
    FLYBASE:FBgn0036340
    Locus tag
    Dmel_CG11274
    See related
    AllianceGenome:FB:FBgn0036340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG11274; Dmel\CG11274; SRm160; SRM160
    Summary
    Involved in several processes, including genitalia development; regulation of alternative mRNA splicing, via spliceosome; and somatic sex determination. Located in nucleus. Part of catalytic step 2 spliceosome and precatalytic spliceosome. Is expressed in several structures, including accessory medulla; brain; embryonic hemocyte primordium; gut section; and imaginal disc. Orthologous to human SRRM1 (serine and arginine repetitive matrix 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See Srrm1 in Genome Data Viewer
    Location:
    69F6-69F6; 3-39 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (13036821..13040976)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (13029921..13034076)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR45172 Neighboring gene uncharacterized protein Neighboring gene long non-coding RNA:CR45157 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Ribosomal protein S4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Rhythmic Behavior Is Controlled by the SRm160 Splicing Factor in Drosophila melanogaster. Beckwith EJ, et al. Genetics, 2017 Oct. PMID 28801530, Free PMC Article
    2. Exonic splicing enhancers: mechanism of action, diversity and role in human genetic diseases. Blencowe BJ. Trends Biochem Sci, 2000 Mar. PMID 10694877
    3. Multifunctional RNA processing protein SRm160 induces apoptosis and regulates eye and genital development in Drosophila. Fan YJ, et al. Genetics, 2014 Aug. PMID 24907259, Free PMC Article
    4. REF1/Aly and the additional exon junction complex proteins are dispensable for nuclear mRNA export. Gatfield D, et al. J Cell Biol, 2002 Nov 25. PMID 12438415, Free PMC Article
    5. The exon junction complex: a splicing factor for long intron containing transcripts? Ashton-Beaucage D, et al. Fly (Austin), 2011 Jul-Sep. PMID 21478676

    See all (52) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Analyses of fly mutants demonstrated that the SRm160 level affects AS(alternative splicing) isoforms of transformer protein, thus determining Drosophila sex determination and development.
      Title: HITS-CLIP reveals sex-differential RNA binding and alterative splicing regulation of SRm160 in Drosophila.
    2. SRm160 affects gene expression in pacemaker neurons to ensure proper oscillations of the molecular clock. SRm160 positively regulates per levels in a splicing-dependent manner.
      Title: Rhythmic Behavior Is Controlled by the SRm160 Splicing Factor in Drosophila melanogaster.
    3. Our results demonstrate that correct dosage of SRm160 function is vital to the survival of the animal, since its overexpression or depletion via mutation or RNA interference is lethal.
      Title: Multifunctional RNA processing protein SRm160 induces apoptosis and regulates eye and genital development in Drosophila.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in compound eye development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in genitalia development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in mRNA splicing, via spliceosome IC
    Inferred by Curator
    more info
    		 PubMed 
    involved_in positive regulation of programmed cell death IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of alternative mRNA splicing, via spliceosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in regulation of circadian rhythm IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of mRNA splicing, via spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in somatic sex determination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of catalytic step 2 spliceosome HDA PubMed 
    part_of exon-exon junction complex TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of precatalytic spliceosome HDA PubMed 
    part_of spliceosomal complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Serine-arginine repetitive matrix 1
    Names
    CG11274-PA
    SRm160
    Srrm1-PA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      13036821..13040976
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_140370.3 → NP_648627.1  Serine-arginine repetitive matrix 1 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_648627.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q6AWQ1, Q9VU43
      Related
      FBpp0075617
      Conserved Domains (1) summary
      pfam01480
      Location:43 → 113
      PWI; PWI domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6AWQ1 Q6AWQ1
    Q9VU43 Q9VU43

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