U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    Msp300 Muscle-specific protein 300 kDa [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 3771968, updated on 17-Dec-2024

    Summary

    Official Symbol
    Msp300provided by FlyBase
    Official Full Name
    Muscle-specific protein 300 kDaprovided by FlyBase
    Primary source
    FLYBASE:FBgn0261836
    Locus tag
    Dmel_CG42768
    See related
    AllianceGenome:FB:FBgn0261836
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Bbbf1; BBF-1; BcDNA:AT10293; BcDNA:GH02446; BcDNA:GH18470; BcDNA:LP10936; CG14035; CG18251; CG18252; CG31649; CG31916; CG33549; CG33715; CG42768; Dmel\CG42768; dNesp1; jf22; l(2)25Ch; l(2)jf22; msp-300; Msp-300; MSP-300; msp300; MSP300; Spec25CD
    Old locus tag
    Dmel_CG14035; Dmel_CG33715
    Summary
    Enables actin binding activity and protein kinase binding activity. Involved in several processes, including cytoskeleton organization; endoplasmic reticulum localization; and larval visceral muscle development. Located in Z disc; nuclear outer membrane; and perinuclear region of cytoplasm. Colocalizes with actin filament. Is expressed in several structures, including adult head; adult heart; epithelium; germline cell; and muscle cell. Used to study Emery-Dreifuss muscular dystrophy. Human ortholog(s) of this gene implicated in arthrogryposis multiplex congenita (multiple); bipolar disorder; cerebellar ataxia (multiple); and muscular dystrophy (multiple). Orthologous to human SYNE1 (spectrin repeat containing nuclear envelope protein 1) and SYNE2 (spectrin repeat containing nuclear envelope protein 2). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Msp300 in Genome Data Viewer
    Location:
    25C6-25C10; 2-15 cM
    Exon count:
    36
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (5100877..5207002)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (5100877..5207002)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene NADH dehydrogenase (ubiquinone) 13 kDa A subunit Neighboring gene ncRNA Neighboring gene small non-coding RNA 765 Neighboring gene small non-coding RNA 128 Neighboring gene small non-coding RNA 158 Neighboring gene Cytochrome P450 28d2 Neighboring gene Cytochrome P450 28d1 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    mobile_element

    • Loc: 5120301-5120402 mobile_element_type = transposon:INE-1{}5017

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables actin binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables actin filament binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein kinase binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in actin filament organization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in cell migration IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in endoplasmic reticulum localization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in female germline ring canal stabilization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in flight IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in larval visceral muscle development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in locomotion IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in mesoderm development NAS
    Non-traceable Author Statement
    more info
    PubMed 
    involved_in microtubule anchoring IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    involved_in mitochondrion localization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in nuclear migration IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in nuclear migration IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in nucleus localization IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    involved_in nucleus localization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in nucleus organization IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    involved_in ovarian nurse cell to oocyte transport IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in somatic muscle development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in Z disc IDA
    Inferred from Direct Assay
    more info
    PubMed 
    colocalizes_with actin filament IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of meiotic nuclear membrane microtubule tethering complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of meiotic nuclear membrane microtubule tethering complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nuclear envelope IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in nuclear outer membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nuclear outer membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in perinuclear region of cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    Muscle-specific protein 300 kDa
    Names
    Box B-binding factor 1
    CG42768-PB
    CG42768-PD
    CG42768-PE
    CG42768-PF
    CG42768-PG
    CG42768-PH
    CG42768-PI
    CG42768-PJ
    CG42768-PK
    CG42768-PL
    CG42768-PM
    Msp-300
    Msp300-PB
    Msp300-PD
    Msp300-PE
    Msp300-PF
    Msp300-PG
    Msp300-PH
    Msp300-PI
    Msp300-PJ
    Msp300-PK
    Msp300-PL
    Msp300-PM
    Muscle-specific protein 300
    Muscle-specific protein, 300 kDa
    Muscle-specific protein-300
    Nesprin1
    lethal(2)25Ch
    nesprin
    repetitive ORF

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      5100877..5207002
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001201767.2NP_001188696.1  Muscle-specific protein 300 kDa, isoform H [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001188696.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9MRF5
      Conserved Domains (8) summary
      cd00014
      Location:272378
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      cd00176
      Location:59626173
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      TIGR02168
      Location:1044111193
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam00307
      Location:420518
      CH; Calponin homology (CH) domain
      pfam10541
      Location:1193011986
      KASH; Nuclear envelope localization domain
      pfam11945
      Location:74917602
      WASH_WAHD; WAHD domain of WASH complex
      pfam13514
      Location:987110661
      AAA_27; AAA domain
      cl02488
      Location:42484445
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    2. NM_001273159.1NP_001260088.1  Muscle-specific protein 300 kDa, isoform J [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001260088.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9PC23
      Conserved Domains (10) summary
      COG1196
      Location:56776591
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      COG4942
      Location:71947422
      EnvC; Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning]
      cd00014
      Location:272378
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      cd00176
      Location:19942205
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      TIGR02168
      Location:64047156
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      TIGR04523
      Location:21242860
      Mplasa_alph_rch; helix-rich Mycoplasma protein
      pfam00307
      Location:438536
      CH; Calponin homology (CH) domain
      pfam10541
      Location:79067962
      KASH; Nuclear envelope localization domain
      pfam11945
      Location:34543565
      WASH_WAHD; WAHD domain of WASH complex
      cl02488
      Location:32703480
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    3. NM_001201768.2NP_001188697.1  Muscle-specific protein 300 kDa, isoform I [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001188697.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9MRD6
      Conserved Domains (8) summary
      cd00014
      Location:272378
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      cd00176
      Location:59626173
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      TIGR02168
      Location:1044111193
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam00307
      Location:420518
      CH; Calponin homology (CH) domain
      pfam10541
      Location:1194311999
      KASH; Nuclear envelope localization domain
      pfam11945
      Location:74917602
      WASH_WAHD; WAHD domain of WASH complex
      pfam13514
      Location:987110661
      AAA_27; AAA domain
      cl02488
      Location:32823494
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    4. NM_001273160.1NP_001260089.1  Muscle-specific protein 300 kDa, isoform K [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001260089.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9PCM8
      Conserved Domains (10) summary
      COG4942
      Location:1116211390
      EnvC; Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning]
      cd00014
      Location:272378
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      cd00176
      Location:59626173
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      TIGR02168
      Location:1037211124
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      TIGR04523
      Location:60926828
      Mplasa_alph_rch; helix-rich Mycoplasma protein
      pfam00307
      Location:420518
      CH; Calponin homology (CH) domain
      pfam10541
      Location:1186111917
      KASH; Nuclear envelope localization domain
      pfam11945
      Location:74227533
      WASH_WAHD; WAHD domain of WASH complex
      pfam13514
      Location:980210592
      AAA_27; AAA domain
      cl02488
      Location:42484445
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    5. NM_001201765.2NP_001188694.1  Muscle-specific protein 300 kDa, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001188694.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      M9MRD1
      Conserved Domains (9) summary
      COG4942
      Location:1159011818
      EnvC; Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning]
      cd00014
      Location:631737
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      cd00176
      Location:63216532
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      TIGR02168
      Location:1080011552
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam00307
      Location:779877
      CH; Calponin homology (CH) domain
      pfam10541
      Location:1228912345
      KASH; Nuclear envelope localization domain
      pfam11945
      Location:78507961
      WASH_WAHD; WAHD domain of WASH complex
      pfam13514
      Location:1023011020
      AAA_27; AAA domain
      cl02488
      Location:36413853
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    6. NM_001273161.1NP_001260090.1  Muscle-specific protein 300 kDa, isoform L [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001260090.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9PC84
      Conserved Domains (9) summary
      COG4942
      Location:1155311781
      EnvC; Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning]
      cd00014
      Location:631737
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      cd00176
      Location:63216532
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      TIGR02168
      Location:1076311515
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam00307
      Location:779877
      CH; Calponin homology (CH) domain
      pfam10541
      Location:1225212308
      KASH; Nuclear envelope localization domain
      pfam11945
      Location:78507961
      WASH_WAHD; WAHD domain of WASH complex
      pfam13514
      Location:1019310983
      AAA_27; AAA domain
      cl02488
      Location:46074804
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    7. NM_001201763.2NP_001188692.1  Muscle-specific protein 300 kDa, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001188692.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9MRD4
      Conserved Domains (7) summary
      COG1196
      Location:63137155
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd00014
      Location:631737
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      cd00176
      Location:63216532
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      TIGR02168
      Location:24013179
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam00307
      Location:779877
      CH; Calponin homology (CH) domain
      pfam11945
      Location:78507961
      WASH_WAHD; WAHD domain of WASH complex
      cl02488
      Location:46074804
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    8. NM_001169414.2NP_001162885.1  Muscle-specific protein 300 kDa, isoform F [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001162885.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8T9A8
      Conserved Domains (1) summary
      cl02488
      Location:17220
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    9. NM_001201766.2NP_001188695.1  Muscle-specific protein 300 kDa, isoform G [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001188695.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9MRJ4
      Conserved Domains (6) summary
      TIGR00618
      Location:1118712008
      sbcc; exonuclease SbcC
      cd00176
      Location:1319613374
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      TIGR02168
      Location:1161412442
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam03280
      Location:1237612529
      Lipase_chap; Proteobacterial lipase chaperone protein
      pfam10541
      Location:1348413540
      KASH; Nuclear envelope localization domain
      cl02488
      Location:1237412564
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    10. NM_001273162.1NP_001260091.1  Muscle-specific protein 300 kDa, isoform M [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001260091.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9PEP8
      Conserved Domains (5) summary
      cd00176
      Location:63416519
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      pfam07851
      Location:45794669
      TMPIT; TMPIT-like protein
      pfam10541
      Location:66296685
      KASH; Nuclear envelope localization domain
      pfam13514
      Location:45705360
      AAA_27; AAA domain
      cl02488
      Location:55195709
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    11. NM_001201764.2NP_001188693.1  Muscle-specific protein 300 kDa, isoform E [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001188693.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9MSG3
      Conserved Domains (2) summary
      cd00176
      Location:17220
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl02488
      Location:119326
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...