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    TPS03 terpene synthase 03 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827377, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TPS03
    Official Full Name
    terpene synthase 03
    Primary source
    TAIR:AT4G16740
    Locus tag
    AT4G16740
    See related
    Araport:AT4G16740
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATTPS03; DL4395W; FCAALL.18; terpene synthase 03
    Summary
    Encodes an (E,E)-alpha-farnesene synthase in the Col ecotype of Arabidopsis. This enzyme can also catalyze the formation of (E)-beta-ocimene as well as trace amounts of myrcene and other related compounds in vitro. The cytosolic localization of the protein may make it favor (E,E)-alpha-farnesene biosynthesis because the precursor of this product, FPP, is primarily cytosolic. Transcript levels for this gene increase in response to treatment with the jasmonic acid mimic coronalon or in response to the insect <i>Plutella xylostella</i>. TPS03 transcripts can also be detected in flowers. A similar protein from the C24 ecotype with one amino acid change (S267F) has a different substrate specificity.
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    Genomic context

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    See TPS03 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (9407611..9411140)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene glycosyltransferase family protein 28 Neighboring gene Ribosomal protein L23/L15e family protein Neighboring gene terpene synthase 02 Neighboring gene Exostosin family protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional identification of AtTPS03 as (E)-beta-ocimene synthase: a monoterpene synthase catalyzing jasmonate- and wound-induced volatile formation in Arabidopsis thaliana. Fäldt J, et al. Planta, 2003 Mar. PMID 12624761
    2. Light-regulated expression of terpene synthase gene, AtTPS03, is controlled by the bZIP transcription factor, HY5, in Arabidopsis thaliana. Michael R, et al. Biochem Biophys Res Commun, 2020 Aug 20. PMID 32703448
    3. Variation of herbivore-induced volatile terpenes among Arabidopsis ecotypes depends on allelic differences and subcellular targeting of two terpene synthases, TPS02 and TPS03. Huang M, et al. Plant Physiol, 2010 Jul. PMID 20463089, Free PMC Article
    4. The Arabidopsis E3 SUMO ligase SIZ1 regulates plant growth and drought responses. Catala R, et al. Plant Cell, 2007 Sep. PMID 17905899, Free PMC Article
    5. Herbivore-induced volatile production by Arabidopsis thaliana leads to attraction of the parasitoid Cotesia rubecula: chemical, behavioral, and gene-expression analysis. Van Poecke RM, et al. J Chem Ecol, 2001 Oct. PMID 11710601

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Light-regulated expression of terpene synthase gene, AtTPS03, is controlled by the bZIP transcription factor, HY5, in Arabidopsis thaliana.
      Title: Light-regulated expression of terpene synthase gene, AtTPS03, is controlled by the bZIP transcription factor, HY5, in Arabidopsis thaliana.
    2. Differences in the relative emissions of (E)-beta-ocimene and (E,E)-alpha-farnesene from different accessions were attributed to allelic variation of two closely related, tandem-duplicated terpene synthase genes, TPS02 and TPS03. [TPS03]
      Title: Variation of herbivore-induced volatile terpenes among Arabidopsis ecotypes depends on allelic differences and subcellular targeting of two terpene synthases, TPS02 and TPS03.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    NM_001036574.1
    NM_117775.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables (E)-beta-ocimene synthase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables alpha-farnesene synthase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables myrcene synthase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables terpene synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables terpene synthase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables tricyclene synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in diterpenoid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in response to herbivore IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to insect IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to jasmonic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to wounding IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to wounding IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within sesquiterpenoid biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast stroma ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    terpene synthase 03
    NP_001031651.1
    • terpene synthase 03 (TPS03); CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase-like sequence-1,8-cineole (TAIR:AT3G25820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_567511.3
    • terpene synthase 03 (TPS03); CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase-like sequence-1,8-cineole (TAIR:AT3G25820.1); Has 1726 Blast hits to 1699 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1722; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      9407611..9411140
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001341133.1 → NP_001329376.1  terpene synthase 03 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B7I0

    2. NM_001341134.1 → NP_001329377.1  terpene synthase 03 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B7I0

    3. NM_117775.4 → NP_567511.3  terpene synthase 03 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567511.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A4FVP2, O23517, Q84NE5, Q8GWA8, Q8LE37, Q9FVI5
      UniProtKB/TrEMBL
      A0A5S9XT42, A0A654FQ20
      Conserved Domains (1) summary
      cd00684
      Location:26 → 561
      Terpene_cyclase_plant_C1; Plant Terpene Cyclases, Class 1

    4. NM_001036574.1 → NP_001031651.1  terpene synthase 03 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031651.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A4FVP2
      Conserved Domains (1) summary
      cd00684
      Location:26 → 392
      Terpene_cyclase_plant_C1; Plant Terpene Cyclases, Class 1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A4FVP2.1

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