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    LOC7455896 cellulose synthase A catalytic subunit 8 [UDP-forming] [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7455896, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC7455896
    Gene description
    cellulose synthase A catalytic subunit 8 [UDP-forming]
    Locus tag
    POPTR_011G069600v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
    Also known as
    CesA1A
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    Genomic context

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    See LOC7455896 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 11 NC_037295.2 (6090232..6097154, complement)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 11 NC_037295.1 (6493169..6500107, complement)

    Chromosome 11 - NC_037295.2Genomic Context describing neighboring genes Neighboring gene SAP-like protein BP-73 Neighboring gene receptor-like protein 51 Neighboring gene uncharacterized LOC7455895 Neighboring gene uncharacterized LOC7463821

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Intron-mediated alternative splicing of WOOD-ASSOCIATED NAC TRANSCRIPTION FACTOR1B regulates cell wall thickening during fiber development in Populus species. Zhao Y, et al. Plant Physiol, 2014 Feb. PMID 24394777, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cellulose synthase (UDP-forming) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellulose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in plant-type primary cell wall biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cellulose synthase A catalytic subunit 8 [UDP-forming]

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037295.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      6090232..6097154 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002316779.4 → XP_002316815.1  cellulose synthase A catalytic subunit 8 [UDP-forming]

      See identical proteins and their annotated locations for XP_002316815.1

      UniProtKB/TrEMBL
      B9I1I4
      Conserved Domains (1) summary
      PLN02195
      Location:1 → 978
      PLN02195; cellulose synthase A
    Nucleotide Protein
    Heading Accession and Version

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