U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    LOC115953005 elongation factor 1-alpha-like [ Quercus lobata ]

    Gene ID: 115953005, updated on 14-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC115953005
    Gene description
    elongation factor 1-alpha-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Quercus lobata
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC115953005 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    100 current ValleyOak3.0 (GCF_001633185.1) 7 NC_044910.1 (45184044..45187412)

    Chromosome 7 - NC_044910.1Genomic Context describing neighboring genes Neighboring gene importin subunit alpha-9 Neighboring gene DEAD-box ATP-dependent RNA helicase 57 Neighboring gene probable beta-1,4-xylosyltransferase IRX9 Neighboring gene protein IQ-DOMAIN 1-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_044910.1 Chromosome 7 Reference ValleyOak3.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation elongation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in translational elongation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    elongation factor 1-alpha-like
    Names
    elongation factor 1-alpha

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Quercus lobata Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ValleyOak3.0

    Genomic

    1. NC_044910.1 Reference ValleyOak3.0

      Range
      45184044..45187412
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031070412.1 → XP_030926272.1  elongation factor 1-alpha-like

      UniProtKB/TrEMBL
      A0A7N2M789
      Conserved Domains (1) summary
      PTZ00141
      Location:1 → 446
      PTZ00141; elongation factor 1- alpha; Provisional
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases