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    BC061237 cDNA sequence BC061237 [ Mus musculus (house mouse) ]

    Gene ID: 385138, updated on 27-Nov-2024

    Summary

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    Official Symbol
    BC061237provided by MGI
    Official Full Name
    cDNA sequence BC061237provided by MGI
    Primary source
    MGI:MGI:2682320
    See related
    Ensembl:ENSMUSG00000072145 AllianceGenome:MGI:2682320
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Is expressed in several structures, including bladder; limb mesenchyme; liver; nervous system; and skeletal musculature. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward testis adult (RPKM 6.9) See more
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    Genomic context

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    See BC061237 in Genome Data Viewer
    Location:
    14 C1; 14 22.55 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (44737579..44743802)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (44500122..44506345)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene predicted gene 5930 Neighboring gene STARR-seq mESC enhancer starr_36519 Neighboring gene predicted gene 8229 Neighboring gene predicted gene 3371 Neighboring gene STARR-seq mESC enhancer starr_36520 Neighboring gene STARR-seq mESC enhancer starr_36521 Neighboring gene predicted gene 8232 Neighboring gene STARR-seq mESC enhancer starr_36522 Neighboring gene STARR-seq mESC enhancer starr_36523 Neighboring gene predicted gene 5624 Neighboring gene predicted gene 8247 Neighboring gene BCL2/adenovirus E1B interacting protein 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC74390

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC385138

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_198677.1 → NP_941079.1  uncharacterized protein LOC385138

      See identical proteins and their annotated locations for NP_941079.1

      Status: PREDICTED

      Source sequence(s)
      BC061237
      Consensus CDS
      CCDS49462.1
      UniProtKB/TrEMBL
      E9Q2T2, E9Q7X3, Q6P8I2
      Related
      ENSMUSP00000094662.3, ENSMUST00000096899.3
      Conserved Domains (1) summary
      pfam04822
      Location:12 → 87
      Takusan; Takusan

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      44737579..44743802
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030247875.1 → XP_030103735.1  uncharacterized protein LOC385138 isoform X1

      Conserved Domains (1) summary
      pfam04822
      Location:1 → 24
      Takusan
    Nucleotide Protein Strain
    Heading Accession and Version

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