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    tudor/PWWP/MBT domain protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830719, updated on 18-Sep-2024

    Summary

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    Official Full Name
    tudor/PWWP/MBT domain protein
    Primary source
    TAIR:AT5G08230
    Locus tag
    AT5G08230
    See related
    Araport:AT5G08230
    Gene type
    protein coding
    RNA name
    miRNA
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F8L15.8; HUA2 LIKE 1; HULK1
    Summary
    HUA and HUA-LIKE (HULK) genes act redundantly to regulate a subset of essential genes, with some (or all) family members also having specific functions.
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    16
    Sequence:
    Chromosome: 5; NC_003076.8 (2641394..2650125, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene nuclear factor Y, subunit B12 Neighboring gene peptidoglycan-binding LysM domain-containing protein Neighboring gene microRNA ath-MIR834 precursor Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene Cytochrome P450 superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A plant-specific HUA2-LIKE (HULK) gene family in Arabidopsis thaliana is essential for development. Jali SS, et al. Plant J, 2014 Oct. PMID 25070081, Free PMC Article
    2. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    • mature miRNA accession:MIMAT0004254
    NM_120906.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    tudor/PWWP/MBT domain protein
    NP_196440.1
    • Tudor/PWWP/MBT domain-containing protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), RNA polymerase II, large subunit, CTD (InterPro:IPR006569), PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT domain-containing protein (TAIR:AT5G23150.1); Has 47075 Blast hits to 25226 proteins in 1376 species: Archae - 78; Bacteria - 7272; Metazoa - 16776; Fungi - 5193; Plants - 9119; Viruses - 1951; Other Eukaryotes - 6686 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2641394..2650125 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120906.6 → NP_196440.1  tudor/PWWP/MBT domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196440.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WN22, Q9LEY4
      UniProtKB/TrEMBL
      A0A178UH94, A0A654FZT1
      Conserved Domains (2) summary
      cd05834
      Location:16 → 101
      HDGF_related; The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, ...
      smart00582
      Location:845 → 975
      RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LEY4.1

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