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    Mir9-3hg Mir9-3 host gene [ Mus musculus (house mouse) ]

    Gene ID: 101694, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Mir9-3hgprovided by MGI
    Official Full Name
    Mir9-3 host geneprovided by MGI
    Primary source
    MGI:MGI:2142071
    See related
    Ensembl:ENSMUSG00000097023 AllianceGenome:MGI:2142071
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    BS-DRL1
    Summary
    Is expressed in brain and ventricular layer. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in CNS E14 (RPKM 15.2), whole brain E14.5 (RPKM 15.0) and 6 other tissues See more
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    Genomic context

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    See Mir9-3hg in Genome Data Viewer
    Location:
    7 D2; 7 45.06 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (79149774..79184151)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (79500026..79534403)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene Fanconi anemia, complementation group I Neighboring gene protein transport protein Sec61 subunit gamma pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E2240 Neighboring gene polymerase (DNA directed), gamma Neighboring gene nuclear encoded tRNA arginine 5 (anticodon TCG) Neighboring gene STARR-seq mESC enhancer starr_19283 Neighboring gene microRNA 9b-3 Neighboring gene microRNA 9-3 Neighboring gene STARR-seq mESC enhancer starr_19284 Neighboring gene predicted gene, 31740 Neighboring gene Rhesus blood group-associated C glycoprotein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Long noncoding RNA BS-DRL1 modulates the DNA damage response and genome stability by interacting with HMGB1 in neurons. Lou MM, et al. Nat Commun, 2021 Jul 1. PMID 34210972, Free PMC Article
    2. Isolation and Functional Examination of the Long Non-Coding RNA Redrum. Lee Y, et al. Mol Cells, 2018 Feb 28. PMID 29237115, Free PMC Article
    3. MicroRNA-9 regulates neurogenesis in mouse telencephalon by targeting multiple transcription factors. Shibata M, et al. J Neurosci, 2011 Mar 2. PMID 21368052, Free PMC Article
    4. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    5. Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Bedogni F, et al. Front Mol Neurosci, 2021. PMID 34321999, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_040311.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AC110909, AC114988, BM950091

    2. NR_040312.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks two exons and includes an alternate exon in the 5' region, compared to variant 1.
      Source sequence(s)
      AC110909, AC114988

    3. NR_040313.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks two consecutive internal exons, compared to variant 1.
      Source sequence(s)
      AC110909, AC114988, CX206040

    4. NR_040314.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) lacks two consecutive internal exons, compared to variant 1.
      Source sequence(s)
      AC110909, AC114988, AK032343
      Related
      ENSMUST00000181511.11

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      79149774..79184151
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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