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    TRDMT1 tRNA aspartic acid methyltransferase 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 353353, updated on 1-Jan-2025

    Summary

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    Official Symbol
    TRDMT1provided by VGNC
    Official Full Name
    tRNA aspartic acid methyltransferase 1provided by VGNC
    Primary source
    VGNC:VGNC:36296
    See related
    BGD:BT10029; Ensembl:ENSBTAG00000020546
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    DNMT2
    Orthologs
    human mouse all
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    Genomic context

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    See TRDMT1 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 13 NC_037340.1 (31549280..31653777, complement)

    Chromosome 13 - NC_037340.1Genomic Context describing neighboring genes Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene Ras suppressor protein 1 Neighboring gene cubilin Neighboring gene vimentin Neighboring gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037340.1 Chromosome 13 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Analysis of DNA (cytosine 5) methyltransferase mRNA sequence and expression in bovine preimplantation embryos, fetal and adult tissues. Golding MC, et al. Gene Expr Patterns, 2003 Oct. PMID 12971987
    2. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    3. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    4. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tRNA (cytosine(38)-C(5))-methyltransferase
    Names
    DNA (cytosine-5)-methyltransferase-like protein 2
    DNA (cytosine-5-)-methyltransferase 2
    tRNA (cytosine-5-)-methyltransferase
    NP_861528.1
    XP_015329465.1
    XP_024856098.1
    XP_024856100.1
    XP_024856101.1
    XP_024856102.1
    XP_024856103.1
    XP_024856105.1
    XP_059748394.1
    XP_059748395.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_181812.2 → NP_861528.1  tRNA (cytosine(38)-C(5))-methyltransferase

      See identical proteins and their annotated locations for NP_861528.1

      Status: PROVISIONAL

      Source sequence(s)
      AY244708
      UniProtKB/Swiss-Prot
      Q58D29, Q7YS61
      UniProtKB/TrEMBL
      A0AAF6Z7Y2
      Related
      ENSBTAP00000027378.5, ENSBTAT00000027378.6
      Conserved Domains (1) summary
      cd00315
      Location:4 → 390
      Cyt_C5_DNA_methylase; Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group ...

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037340.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      31549280..31653777 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025000332.2 → XP_024856100.1  tRNA (cytosine(38)-C(5))-methyltransferase isoform X2

      Conserved Domains (1) summary
      cl17173
      Location:19 → 325
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

    2. XM_015473979.3 → XP_015329465.1  tRNA (cytosine(38)-C(5))-methyltransferase isoform X2

      Conserved Domains (1) summary
      cl17173
      Location:19 → 325
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

    3. XM_025000333.2 → XP_024856101.1  tRNA (cytosine(38)-C(5))-methyltransferase isoform X2

      Conserved Domains (1) summary
      cl17173
      Location:19 → 325
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

    4. XM_025000330.2 → XP_024856098.1  tRNA (cytosine(38)-C(5))-methyltransferase isoform X1

      Conserved Domains (1) summary
      cl17173
      Location:50 → 356
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

    5. XM_025000337.2 → XP_024856105.1  tRNA (cytosine(38)-C(5))-methyltransferase isoform X3

      UniProtKB/TrEMBL
      A0AAF6Z7Y2
      Conserved Domains (1) summary
      cl17173
      Location:1 → 319
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

    6. XM_025000335.2 → XP_024856103.1  tRNA (cytosine(38)-C(5))-methyltransferase isoform X2

      Conserved Domains (1) summary
      cl17173
      Location:19 → 325
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

    7. XM_059892412.1 → XP_059748395.1  tRNA (cytosine(38)-C(5))-methyltransferase isoform X2

    8. XM_025000334.2 → XP_024856102.1  tRNA (cytosine(38)-C(5))-methyltransferase isoform X2

      Conserved Domains (1) summary
      cl17173
      Location:19 → 325
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

    9. XM_059892411.1 → XP_059748394.1  tRNA (cytosine(38)-C(5))-methyltransferase isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7YS61.1 GenPept UniProtKB/Swiss-Prot:Q7YS61

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