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    LINC02053 long intergenic non-protein coding RNA 2053 [ Homo sapiens (human) ]

    Gene ID: 100505609, updated on 10-Dec-2024

    Summary

    Official Symbol
    LINC02053provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2053provided by HGNC
    Primary source
    HGNC:HGNC:52893
    See related
    Ensembl:ENSG00000241696 AllianceGenome:HGNC:52893
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 2.2) See more
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    Genomic context

    See LINC02053 in Genome Data Viewer
    Location:
    3q26.33
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (180414173..180422501)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (183216074..183224404)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (180131961..180140289)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene glyceraldehyde 3 phosphate dehydrogenase pseudogene 36 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20874 Neighboring gene RALBP1 pseudogene 1 Neighboring gene TTC14 divergent transcript Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:180234098-180234598 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:180234599-180235099 Neighboring gene U8 small nucleolar RNA Neighboring gene RNA, U6 small nuclear 486, pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_132416.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AA939063, BC041442, BI830672
      Related
      ENST00000488262.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      180414173..180422501
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      183216074..183224404
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)