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    PAP/OAS1 substrate-binding domain superfamily [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824325, updated on 18-Sep-2024

    Summary

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    Official Full Name
    PAP/OAS1 substrate-binding domain superfamily
    Primary source
    TAIR:AT3G51620
    Locus tag
    AT3G51620
    See related
    Araport:AT3G51620
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T18N14.7
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    9
    Sequence:
    Chromosome: 3; NC_003074.8 (19143334..19148244)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene lipid transfer protein 5 Neighboring gene ATP-dependent helicase/deoxyribonuclease subunit B Neighboring gene with no lysine (K) kinase 5 Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_115021.2
    NM_180347.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    PAP/OAS1 substrate-binding domain superfamily
    NP_190730.2
    • PAP/OAS1 substrate-binding domain superfamily; BEST Arabidopsis thaliana protein match is: nucleotidyltransferases (TAIR:AT3G61690.1); Has 270 Blast hits to 218 proteins in 57 species: Archae - 0; Bacteria - 2; Metazoa - 18; Fungi - 29; Plants - 185; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).
    NP_850678.2
    • PAP/OAS1 substrate-binding domain superfamily; BEST Arabidopsis thaliana protein match is: nucleotidyltransferases (TAIR:AT3G61690.1); Has 386 Blast hits to 356 proteins in 104 species: Archae - 0; Bacteria - 4; Metazoa - 102; Fungi - 40; Plants - 181; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19143334..19148244
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339524.1 → NP_001326436.1  PAP/OAS1 substrate-binding domain superfamily [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VFU7, A0A1I9LP98

    2. NM_180347.4 → NP_850678.2  PAP/OAS1 substrate-binding domain superfamily [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850678.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XKN0, F4J4G2
      Conserved Domains (1) summary
      cd05402
      Location:57 → 163
      NT_PAP_TUTase; Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases

    3. NM_115021.2 → NP_190730.2  PAP/OAS1 substrate-binding domain superfamily [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190730.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J4G3, Q9SCY9
      Conserved Domains (1) summary
      cd05402
      Location:57 → 163
      NT_PAP_TUTase; Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases
    Nucleotide Protein
    Heading Accession and Version

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