U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    cep44 centrosomal protein 44 [ Danio rerio (zebrafish) ]

    Gene ID: 767769, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    cep44provided by ZNC
    Official Full Name
    centrosomal protein 44provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060929-392
    See related
    Ensembl:ENSDARG00000053106 AllianceGenome:ZFIN:ZDB-GENE-060929-392
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:153894
    Summary
    Predicted to be involved in centriole replication and centriole-centriole cohesion. Predicted to be located in centriole; cytoplasm; and midbody. Predicted to be active in centrosome and spindle pole. Is expressed in head and post-vent region. Orthologous to human CEP44 (centrosomal protein 44). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See cep44 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (38338983..38374799)
    105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (37643170..37655621)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene heart and neural crest derivatives expressed 2 Neighboring gene uncharacterized LOC137495612 Neighboring gene F-box protein 8 Neighboring gene 15-hydroxyprostaglandin dehydrogenase Neighboring gene glycine receptor, alpha 3

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Individual knock out of glycine receptor alpha subunits identifies a specific requirement of glra1 for motor function in zebrafish. Samarut E, et al. PLoS One, 2019. PMID 31048868, Free PMC Article
    2. Prpf31 is essential for the survival and differentiation of retinal progenitor cells by modulating alternative splicing. Li J, et al. Nucleic Acids Res, 2021 Feb 26. PMID 33476374, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Clone Names

    • MGC153894

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in centriole replication IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in centriole-centriole cohesion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in centriole IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in centrosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in midbody IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in spindle pole IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    centrosomal protein of 44 kDa

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001076736.2 → NP_001070204.2  centrosomal protein of 44 kDa

      Status: VALIDATED

      Source sequence(s)
      CU928070
      UniProtKB/TrEMBL
      A0A8M1NBH8, A0A8M9PJ84, F6NJX7
      Related
      ENSDARP00000069571.4, ENSDART00000075086.5
      Conserved Domains (1) summary
      pfam15007
      Location:5 → 129
      CEP44; Centrosomal spindle body, CEP44

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      38338983..38374799
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068220854.1 → XP_068076955.1  centrosomal protein of 44 kDa isoform X1

      UniProtKB/TrEMBL
      A0A8M9PJ84

    2. XM_068220855.1 → XP_068076956.1  centrosomal protein of 44 kDa isoform X2

      UniProtKB/TrEMBL
      A0A8M9PJ84

    3. XM_068220857.1 → XP_068076958.1  centrosomal protein of 44 kDa isoform X4

      UniProtKB/TrEMBL
      A0A8M9PJ84

    4. XM_068220856.1 → XP_068076957.1  centrosomal protein of 44 kDa isoform X3

      UniProtKB/TrEMBL
      A0A8M9PJ84

    5. XM_021475843.2 → XP_021331518.1  centrosomal protein of 44 kDa isoform X5

      UniProtKB/TrEMBL
      A0A8M9PJ84, A0A8M9PWN9
      Conserved Domains (1) summary
      pfam15007
      Location:5 → 129
      CEP44; Centrosomal spindle body, CEP44
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools