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    RECA1 recA DNA recombination family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844246, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RECA1
    Official Full Name
    recA DNA recombination family protein
    Primary source
    TAIR:AT1G79050
    Locus tag
    AT1G79050
    See related
    Araport:AT1G79050
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    homolog of bacterial RecA; YUP8H12R.33; YUP8H12R_33
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    Genomic context

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    See RECA1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Sequence:
    Chromosome: 1; NC_003070.9 (29736959..29740179, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Enhancer of polycomb-like transcription factor protein Neighboring gene Chaperone DnaJ-domain superfamily protein Neighboring gene photosystem II subunit R Neighboring gene ncRNA Neighboring gene miscRNA Neighboring gene TPRXL Neighboring gene SNARE-associated protein-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Chloroplast-targeted bacterial RecA proteins confer tolerance to chloroplast DNA damage by methyl viologen or UV-C radiation in tobacco (Nicotiana tabacum) plants. Jeon H, et al. Physiol Plant, 2013 Feb. PMID 22651245
    2. RecA maintains the integrity of chloroplast DNA molecules in Arabidopsis. Rowan BA, et al. J Exp Bot, 2010 Jun. PMID 20406785, Free PMC Article
    3. RNase H1C collaborates with ssDNA binding proteins WHY1/3 and recombinase RecA1 to fulfill the DNA damage repair in Arabidopsis chloroplasts. Wang W, et al. Nucleic Acids Res, 2021 Jul 9. PMID 34133716, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. RNase H1C collaborates with ssDNA binding proteins WHY1/3 and recombinase RecA1 to fulfill the DNA damage repair in Arabidopsis chloroplasts.
      Title: RNase H1C collaborates with ssDNA binding proteins WHY1/3 and recombinase RecA1 to fulfill the DNA damage repair in Arabidopsis chloroplasts.
    2. The effects on chloroplast DNA (cpDNA) structure of two nuclear-encoded, chloroplast-targeted homologues of RecA in Arabidopsis were examined.
      Title: RecA maintains the integrity of chloroplast DNA molecules in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001084375.1
    NM_106556.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP-dependent DNA damage sensor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA damage response IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    recA DNA recombination family protein
    NP_001077844.1
    • recA DNA recombination family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, SOS response, DNA recombination, DNA metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA recombination/repair protein RecA/RadB, ATP-binding domain (InterPro:IPR020588), ATPase, AAA+ type, core (InterPro:IPR003593), DNA recombination/repair protein RecA, conserved site (InterPro:IPR020584), DNA recombination and repair protein RecA (InterPro:IPR013765), DNA recombination/repair protein RecA, monomer-monomer interface (InterPro:IPR020587); BEST Arabidopsis thaliana protein match is: recA DNA recombination family protein (TAIR:AT2G19490.1); Has 19704 Blast hits to 19632 proteins in 5647 species: Archae - 493; Bacteria - 14777; Metazoa - 222; Fungi - 191; Plants - 243; Viruses - 74; Other Eukaryotes - 3704 (source: NCBI BLink).
    NP_565198.1
    • recA DNA recombination family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, SOS response, DNA recombination, DNA metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA recombination/repair protein RecA/RadB, ATP-binding domain (InterPro:IPR020588), ATPase, AAA+ type, core (InterPro:IPR003593), DNA recombination/repair protein RecA, conserved site (InterPro:IPR020584), DNA recombination and repair protein RecA (InterPro:IPR013765), DNA recombination/repair protein RecA, monomer-monomer interface (InterPro:IPR020587); BEST Arabidopsis thaliana protein match is: recA DNA recombination family protein (TAIR:AT2G19490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29736959..29740179 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001084375.1 → NP_001077844.1  recA DNA recombination family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077844.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MQK1
      Conserved Domains (2) summary
      smart00382
      Location:134 → 302
      AAA; ATPases associated with a variety of cellular activities
      cl21455
      Location:82 → 337
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    2. NM_106556.2 → NP_565198.1  recA DNA recombination family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565198.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q39199, Q39200
      UniProtKB/TrEMBL
      A0A178WA75, A0A5S9WVN7
      Conserved Domains (1) summary
      PRK09354
      Location:82 → 402
      recA; recombinase A; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q39199.1

    Gene LinkOut

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