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    ATP binding microtubule motor family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825523, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ATP binding microtubule motor family protein
    Primary source
    TAIR:AT3G63480
    Locus tag
    AT3G63480
    See related
    Araport:AT3G63480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtKin-1; AtPSS1; Kin-1; kinesin 1
    Summary
    Encodes a protein with sequence similarity to rice kinesin protein. Homozygous loss of function mutations have reduced fertility due to decreased seed set and reduced pollen viability.
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    16
    Sequence:
    Chromosome: 3; NC_003074.8 (23440887..23444088, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene transducin family protein / WD-40 repeat family protein Neighboring gene serine carboxypeptidase-like 40 Neighboring gene ncRNA Neighboring gene Ribosomal protein L1p/L10e family Neighboring gene ncRNA Neighboring gene fibronectin type III domain protein (DUF1423) Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis kinesin gene AtKin-1 plays a role in the nuclear division process during megagametogenesis. Wang H, et al. Plant Cell Rep, 2014 May. PMID 24667993
    2. The kinesin AtPSS1 promotes synapsis and is required for proper crossover distribution in meiosis. Duroc Y, et al. PLoS Genet, 2014 Oct. PMID 25330379, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. PSS1 promotes synapsis and is required for proper crossover distribution in meiosis.
      Title: The kinesin AtPSS1 promotes synapsis and is required for proper crossover distribution in meiosis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_116213.3
    NM_180411.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables microtubule motor activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein homodimerization activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within homologous chromosome pairing at meiosis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within megagametogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in microtubule-based movement IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in pollen development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in seed development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ATP binding microtubule motor family protein
    NP_567148.1
    • ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: phragmoplast-associated kinesin-related protein 1 (TAIR:AT4G14150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_850742.1
    • ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: phragmoplast-associated kinesin-related protein 1 (TAIR:AT4G14150.1); Has 10148 Blast hits to 9733 proteins in 305 species: Archae - 0; Bacteria - 0; Metazoa - 4474; Fungi - 1347; Plants - 1834; Viruses - 0; Other Eukaryotes - 2493 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      23440887..23444088 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180411.3 → NP_850742.1  ATP binding microtubule motor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850742.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J114, Q8GW44, Q8LEG9, Q9LY67
      UniProtKB/TrEMBL
      A0A178VCM5, A0A5S9XNC4
      Conserved Domains (2) summary
      cd01369
      Location:1 → 334
      KISc_KHC_KIF5; Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup
      pfam00225
      Location:9 → 334
      Kinesin; Kinesin motor domain

    2. NM_116213.3 → NP_567148.1  ATP binding microtubule motor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567148.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VCM5, A0A5S9XNC4
      Conserved Domains (2) summary
      cd01369
      Location:1 → 338
      KISc_KHC_KIF5; Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup
      pfam00225
      Location:9 → 338
      Kinesin; Kinesin motor domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GW44.1

    Gene LinkOut

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