U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    enc3 ectodermal-neural cortex 3 [ Danio rerio (zebrafish) ]

    Gene ID: 327531, updated on 9-Dec-2024

    Summary

    Official Symbol
    enc3provided by ZNC
    Official Full Name
    ectodermal-neural cortex 3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-5742
    See related
    Ensembl:ENSDARG00000058322 AllianceGenome:ZFIN:ZDB-GENE-030131-5742
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    enc1; enc1l; id:ibd3303; wu:fi15g12
    Summary
    Acts upstream of or within determination of heart left/right asymmetry and determination of liver left/right asymmetry. Is expressed in several structures, including anterior neural rod; germ ring; mesoderm; nervous system; and tail bud. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See enc3 in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (10781957..10795946)
    105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (10752275..10766264)

    Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene transmembrane serine protease 9 Neighboring gene LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated Neighboring gene translocase of inner mitochondrial membrane 13 homolog (yeast) Neighboring gene rho/rac guanine nucleotide exchange factor (GEF) 18b Neighboring gene insulin receptor b

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General protein information

    Preferred Names
    ectodermal-neural cortex 3
    Names
    ectodermal-neural cortex (with BTB-like domain)

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001001402.2NP_001001402.2  ectodermal-neural cortex 3

      See identical proteins and their annotated locations for NP_001001402.2

      Status: VALIDATED

      Source sequence(s)
      BX908398
      UniProtKB/TrEMBL
      F6P777, Q789P9, Q7ZT06
      Related
      ENSDARP00000075626.3, ENSDART00000081183.4
      Conserved Domains (6) summary
      smart00612
      Location:539585
      Kelch; Kelch domain
      PHA03098
      Location:60566
      PHA03098; kelch-like protein; Provisional
      sd00038
      Location:330374
      Kelch; KELCH repeat [structural motif]
      pfam00651
      Location:36140
      BTB; BTB/POZ domain
      pfam01344
      Location:329374
      Kelch_1; Kelch motif
      pfam07707
      Location:149251
      BACK; BTB And C-terminal Kelch

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007133.7 Reference GRCz11 Primary Assembly

      Range
      10781957..10795946
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)