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    Triqk triple QxxK/R motif containing [ Mus musculus (house mouse) ]

    Gene ID: 208820, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Triqkprovided by MGI
    Official Full Name
    triple QxxK/R motif containingprovided by MGI
    Primary source
    MGI:MGI:3650048
    See related
    Ensembl:ENSMUSG00000055963 AllianceGenome:MGI:3650048
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm11818; C130086A10
    Summary
    Predicted to be located in endoplasmic reticulum membrane. Is expressed in several structures, including genitourinary system; heart; liver; lung; and spleen. Orthologous to human TRIQK (triple QxxK/R motif containing). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Broad expression in CNS E18 (RPKM 3.7), bladder adult (RPKM 2.9) and 17 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Triqk in Genome Data Viewer
    Location:
    4 A1; 4 5.58 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (12906837..12981485)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (12906837..12981485)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 52759 Neighboring gene STARR-seq mESC enhancer starr_09614 Neighboring gene STARR-seq mESC enhancer starr_09615 Neighboring gene predicted gene, 57728 Neighboring gene STARR-seq mESC enhancer starr_09616 Neighboring gene STARR-seq mESC enhancer starr_09617 Neighboring gene STARR-seq mESC enhancer starr_09619 Neighboring gene STARR-seq mESC enhancer starr_09620 Neighboring gene STARR-seq mESC enhancer starr_09621 Neighboring gene predicted gene 11820 Neighboring gene predicted gene, 46847

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. TRIQK, a novel family of small proteins localized to the endoplasmic reticulum membrane, is conserved across vertebrates. Onuma Y, et al. Zoolog Sci, 2008 Jul. PMID 18828657
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    triple QxxK/R motif-containing protein
    Names
    protein TRIQK
    triple repetitive-sequence of QXXK/R protein homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001171801.1 → NP_001165272.1  triple QxxK/R motif-containing protein

      See identical proteins and their annotated locations for NP_001165272.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      AL808105
      Consensus CDS
      CCDS71348.1
      UniProtKB/Swiss-Prot
      B2B9E1
      Related
      ENSMUSP00000139205.2, ENSMUST00000143186.8
      Conserved Domains (1) summary
      pfam15168
      Location:1 → 52
      TRIQK; Triple QxxK/R motif-containing protein family

    2. NM_173746.3 → NP_776107.2  triple QxxK/R motif-containing protein

      See identical proteins and their annotated locations for NP_776107.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      AL808105
      Consensus CDS
      CCDS71348.1
      UniProtKB/Swiss-Prot
      B2B9E1
      Related
      ENSMUSP00000138966.2, ENSMUST00000183345.2
      Conserved Domains (1) summary
      pfam15168
      Location:1 → 52
      TRIQK; Triple QxxK/R motif-containing protein family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      12906837..12981485
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B2B9E1.1 GenPept UniProtKB/Swiss-Prot:B2B9E1

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