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    si:dkey-92i17.2 si:dkey-92i17.2 [ Danio rerio (zebrafish) ]

    Gene ID: 563325, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:dkey-92i17.2provided by ZNC
    Official Full Name
    si:dkey-92i17.2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-6759
    See related
    Ensembl:ENSDARG00000093612 AllianceGenome:ZFIN:ZDB-GENE-030131-6759
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fa04d06; wu:fa04d06
    Summary
    Predicted to be active in nucleoplasm. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See si:dkey-92i17.2 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (10607446..10617971, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (10301432..10311983, complement)

    Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene P2Y receptor family member 10 Neighboring gene G protein-coupled receptor 174 Neighboring gene nucleoporin 62 like Neighboring gene ATRX chromatin remodeler

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    is_active_in nucleoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 106

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007125.7 Reference GRCz11 Primary Assembly

      Range
      10607446..10617971 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021481121.2 → XP_021336796.1  coiled-coil domain-containing protein 106 isoform X2

      UniProtKB/TrEMBL
      A0A8M9QBC5, A0A8M9QKU7
      Conserved Domains (1) summary
      pfam15794
      Location:216 → 429
      CCDC106; Coiled-coil domain-containing protein 106

    2. XM_021481120.2 → XP_021336795.1  coiled-coil domain-containing protein 106 isoform X1

      UniProtKB/TrEMBL
      A0A8M9PZI8, A0A8M9QPC1, E9QE99
      Related
      ENSDARP00000114776.1, ENSDART00000136649.4
      Conserved Domains (1) summary
      pfam15794
      Location:234 → 447
      CCDC106; Coiled-coil domain-containing protein 106

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394895.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      203295..214428 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021472755.2 → XP_021328430.1  coiled-coil domain-containing protein 106 isoform X2

      UniProtKB/TrEMBL
      A0A8M9PBJ9, A0A8M9Q550
      Conserved Domains (1) summary
      pfam15794
      Location:216 → 429
      CCDC106; Coiled-coil domain-containing protein 106

    2. XM_021472754.2 → XP_021328429.1  coiled-coil domain-containing protein 106 isoform X1

      UniProtKB/TrEMBL
      A0A8M9PU96, A0A8M9Q1C9
      Conserved Domains (1) summary
      pfam15794
      Location:234 → 447
      CCDC106; Coiled-coil domain-containing protein 106

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395312.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      123031..133261 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017359092.3 → XP_017214581.2  coiled-coil domain-containing protein 106 isoform X2

      UniProtKB/TrEMBL
      A0A8M6Z2Q1, A0A8M9QBC5
      Conserved Domains (1) summary
      pfam15794
      Location:216 → 429
      CCDC106; Coiled-coil domain-containing protein 106

    2. XM_002664317.6 → XP_002664363.3  coiled-coil domain-containing protein 106 isoform X1

      UniProtKB/TrEMBL
      A0A8M1RKM6, A0A8M9PZI8
      Conserved Domains (1) summary
      pfam15794
      Location:234 → 447
      CCDC106; Coiled-coil domain-containing protein 106
    Nucleotide Protein Strain
    Heading Accession and Version

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