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    trarg1a trafficking regulator of GLUT4 (SLC2A4) 1a (gene/pseudogene) [ Danio rerio (zebrafish) ]

    Gene ID: 101886018, updated on 9-Dec-2024

    Summary

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    Official Symbol
    trarg1aprovided by ZNC
    Official Full Name
    trafficking regulator of GLUT4 (SLC2A4) 1a (gene/pseudogene)provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-131121-306
    See related
    Ensembl:ENSDARG00000090481 AllianceGenome:ZFIN:ZDB-GENE-131121-306
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    tusc5; tusc5a; si:dkey-151p21.9
    Summary
    Acts upstream of or within axon extension. Predicted to be active in membrane. Is expressed in Rohon-Beard neurons; hindbrain; and trigeminal sensory neurons. Orthologous to human TRARG1 (trafficking regulator of GLUT4 (SLC2A4) 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See trarg1a in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (24845397..24869493, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (24911155..24934531, complement)

    Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene carboxypeptidase D, a Neighboring gene golgi SNAP receptor complex member 1 Neighboring gene aryl hydrocarbon receptor interacting protein-like 1 Neighboring gene uncharacterized LOC137487751 Neighboring gene microRNA 22a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Identification of possible downstream genes required for the extension of peripheral axons in primary sensory neurons. Aoki M, et al. Biochem Biophys Res Commun, 2014 Mar 7. PMID 24513284
    2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within axon extension IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    trafficking regulator of GLUT4 1
    Names
    tumor suppressor candidate 5a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007126.7 Reference GRCz11 Primary Assembly

      Range
      24845397..24869493 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021466430.2 → XP_021322105.1  trafficking regulator of GLUT4 1

      UniProtKB/TrEMBL
      A0A8M2B4G6, E7F6S5
      Related
      ENSDARP00000110979.1, ENSDART00000127047.3
      Conserved Domains (1) summary
      pfam04505
      Location:99 → 166
      CD225; Interferon-induced transmembrane protein

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394947.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      604635..611461 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_002457435.2 RNA Sequence

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395323.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      197701..219174 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005157620.5 → XP_005157677.1  trafficking regulator of GLUT4 1

      UniProtKB/TrEMBL
      A0A8M2B4G6, E7F6S5
      Conserved Domains (1) summary
      pfam04505
      Location:99 → 166
      CD225; Interferon-induced transmembrane protein
    Nucleotide Protein
    Heading Accession and Version

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