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    carm1l coactivator-associated arginine methyltransferase 1, like [ Danio rerio (zebrafish) ]

    Gene ID: 100003090, updated on 9-Dec-2024

    Summary

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    Official Symbol
    carm1lprovided by ZNC
    Official Full Name
    coactivator-associated arginine methyltransferase 1, likeprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-090312-219
    See related
    Ensembl:ENSDARG00000091531 AllianceGenome:ZFIN:ZDB-GENE-090312-219
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable histone H3R2 methyltransferase activity. Predicted to be involved in chromatin remodeling and regulation of DNA-templated transcription. Predicted to act upstream of or within peptidyl-arginine methylation. Predicted to be located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See carm1l in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (5060212..5090834)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (5059887..5090291)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene enolase-phosphatase 1 Neighboring gene transmembrane protein 150C Neighboring gene SEC31 homolog A, COPII coat complex component Neighboring gene zgc:113274

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. A network of epigenetic regulators guides developmental haematopoiesis in vivo. Huang HT, et al. Nat Cell Biol, 2013 Dec. PMID 24240475, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein-arginine N-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein-arginine omega-N asymmetric methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within methylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within peptidyl-arginine methylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    histone-arginine methyltransferase CARM1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      5060212..5090834
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021479237.2 → XP_021334912.1  histone-arginine methyltransferase CARM1 isoform X2

      UniProtKB/TrEMBL
      A0A8M9PTS5
      Conserved Domains (2) summary
      pfam05185
      Location:101 → 409
      PRMT5; PRMT5 arginine-N-methyltransferase
      cl17171
      Location:32 → 119
      PH-like; Pleckstrin homology-like domain

    2. XM_021479236.2 → XP_021334911.1  histone-arginine methyltransferase CARM1 isoform X1

      UniProtKB/TrEMBL
      A0A8M9QGR6
      Conserved Domains (2) summary
      pfam05185
      Location:101 → 410
      PRMT5; PRMT5 arginine-N-methyltransferase
      cl17171
      Location:32 → 119
      PH-like; Pleckstrin homology-like domain

    3. XM_021479238.2 → XP_021334913.1  histone-arginine methyltransferase CARM1 isoform X3

      UniProtKB/TrEMBL
      A0A8M9Q698
      Related
      ENSDARP00000118811.1, ENSDART00000145908.3
      Conserved Domains (2) summary
      pfam05185
      Location:101 → 410
      PRMT5; PRMT5 arginine-N-methyltransferase
      cl17171
      Location:32 → 119
      PH-like; Pleckstrin homology-like domain

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394763.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      117653..148226
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009305104.4 → XP_009303379.2  histone-arginine methyltransferase CARM1 isoform X1

      UniProtKB/TrEMBL
      A0A8M3BCT6
      Conserved Domains (2) summary
      pfam05185
      Location:101 → 410
      PRMT5; PRMT5 arginine-N-methyltransferase
      cl17171
      Location:32 → 119
      PH-like; Pleckstrin homology-like domain

    2. XM_068218562.1 → XP_068074663.1  histone-arginine methyltransferase CARM1 isoform X4

    3. XM_009305105.4 → XP_009303380.2  histone-arginine methyltransferase CARM1 isoform X2

      UniProtKB/TrEMBL
      A0A8M3AWH1
      Conserved Domains (2) summary
      pfam05185
      Location:101 → 409
      PRMT5; PRMT5 arginine-N-methyltransferase
      cl17171
      Location:32 → 119
      PH-like; Pleckstrin homology-like domain

    4. XM_017357998.3 → XP_017213487.2  histone-arginine methyltransferase CARM1 isoform X3

      UniProtKB/TrEMBL
      A0A8M6Z2Z2
      Conserved Domains (2) summary
      pfam05185
      Location:101 → 410
      PRMT5; PRMT5 arginine-N-methyltransferase
      cl17171
      Location:32 → 119
      PH-like; Pleckstrin homology-like domain

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395286.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      109885..141347
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068219281.1 → XP_068075382.1  histone-arginine methyltransferase CARM1 isoform X1

      UniProtKB/TrEMBL
      A0A8M3BCT6

    2. XM_068219279.1 → XP_068075380.1  histone-arginine methyltransferase CARM1 isoform X2

      UniProtKB/TrEMBL
      A0A8M3AWH1

    3. XM_068219280.1 → XP_068075381.1  histone-arginine methyltransferase CARM1 isoform X5

    4. XM_021474200.2 → XP_021329875.1  histone-arginine methyltransferase CARM1 isoform X3

      UniProtKB/TrEMBL
      A0A8M6Z2Z2
      Conserved Domains (2) summary
      pfam05185
      Location:101 → 410
      PRMT5; PRMT5 arginine-N-methyltransferase
      cl17171
      Location:32 → 119
      PH-like; Pleckstrin homology-like domain
    Nucleotide Protein
    Heading Accession and Version

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