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    zbed4 zinc finger, BED-type containing 4 [ Danio rerio (zebrafish) ]

    Gene ID: 100000808, updated on 9-Dec-2024

    Summary

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    Official Symbol
    zbed4provided by ZNC
    Official Full Name
    zinc finger, BED-type containing 4provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041210-305
    See related
    Ensembl:ENSDARG00000024306 AllianceGenome:ZFIN:ZDB-GENE-041210-305
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:dkey-164m14.5
    Summary
    Predicted to enable DNA binding activity; metal ion binding activity; and protein dimerization activity. Predicted to be located in nucleus. Orthologous to human ZBED4 (zinc finger BED-type containing 4). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See zbed4 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (27112397..27129689, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (27123109..27140406, complement)

    Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene cysteine-rich with EGF-like domains 2 Neighboring gene ALG12 alpha-1,6-mannosyltransferase Neighboring gene bromodomain containing 1a Neighboring gene uncharacterized LOC137491561

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger BED domain-containing protein 4
    Names
    zinc finger, BED domain containing 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001082941.1 → NP_001076410.1  zinc finger BED domain-containing protein 4

      See identical proteins and their annotated locations for NP_001076410.1

      Status: PROVISIONAL

      Source sequence(s)
      CR751234
      UniProtKB/TrEMBL
      A0A8M1NC33, Q5RFV1
      Related
      ENSDARP00000033717.4, ENSDART00000034534.6
      Conserved Domains (3) summary
      smart00614
      Location:538 → 586
      ZnF_BED; BED zinc finger
      pfam02892
      Location:205 → 253
      zf-BED; BED zinc finger
      pfam05699
      Location:1165 → 1242
      Dimer_Tnp_hAT; hAT family C-terminal dimerization region

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007115.7 Reference GRCz11 Primary Assembly

      Range
      27112397..27129689 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005168533.5 → XP_005168590.1  zinc finger BED domain-containing protein 4 isoform X1

      See identical proteins and their annotated locations for XP_005168590.1

      UniProtKB/TrEMBL
      A0A8M1NC33, Q5RFV1
      Related
      ENSDARP00000115355.1, ENSDART00000131240.3
      Conserved Domains (3) summary
      smart00614
      Location:538 → 586
      ZnF_BED; BED zinc finger
      pfam02892
      Location:205 → 253
      zf-BED; BED zinc finger
      pfam05699
      Location:1165 → 1242
      Dimer_Tnp_hAT; hAT family C-terminal dimerization region

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394558.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      74293..78042 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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