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    abi3a ABI family, member 3a [ Danio rerio (zebrafish) ]

    Gene ID: 767807, updated on 4-Jan-2025

    Summary

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    Official Symbol
    abi3aprovided by ZNC
    Official Full Name
    ABI family, member 3aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060929-958
    See related
    Ensembl:ENSDARG00000060072 AllianceGenome:ZFIN:ZDB-GENE-060929-958
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:153739
    Summary
    Predicted to be located in filopodium. Orthologous to human ABI3 (ABI family member 3). [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
    all
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    Genomic context

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    See abi3a in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (33395942..33417826, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (33264228..33286255, complement)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene MAGUK p55 scaffold protein 2a Neighboring gene si:dkey-283b1.6 Neighboring gene dynein axonemal assembly factor 19 Neighboring gene ribosomal protein L23

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Zebrafish Collagen Type I: Molecular and Biochemical Characterization of the Major Structural Protein in Bone and Skin. Gistelinck C, et al. Sci Rep, 2016 Feb 15. PMID 26876635, Free PMC Article
    2. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    3. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC153739

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in filopodium IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ABI family, member 3a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001076774.2 → NP_001070242.2  ABI family, member 3a

      Status: VALIDATED

      Source sequence(s)
      CR396582
      UniProtKB/TrEMBL
      Q08C24
      Related
      ENSDARP00000078719.5, ENSDART00000084284.7
      Conserved Domains (2) summary
      cd11826
      Location:400 → 451
      SH3_Abi; Src homology 3 domain of Abl Interactor proteins
      pfam07815
      Location:99 → 177
      Abi_HHR; Abl-interactor HHR

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      33395942..33417826 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005164048.5 → XP_005164105.1  ABI family, member 3a isoform X1

      UniProtKB/TrEMBL
      A0A8M2BBC3, Q08C24
      Conserved Domains (2) summary
      cd11826
      Location:476 → 527
      SH3_Abi; Src homology 3 domain of Abl Interactor proteins
      pfam07815
      Location:99 → 177
      Abi_HHR; Abl-interactor HHR

    2. XM_021471554.2 → XP_021327229.1  ABI family, member 3a isoform X2

      UniProtKB/TrEMBL
      A0A8M9PQS9
      Conserved Domains (1) summary
      pfam07815
      Location:99 → 177
      Abi_HHR; Abl-interactor HHR
    Nucleotide Protein Strain
    Heading Accession and Version

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