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    epdl2 ependymin-like 2 [ Danio rerio (zebrafish) ]

    Gene ID: 557419, updated on 9-Dec-2024

    Summary

    Official Symbol
    epdl2provided by ZNC
    Official Full Name
    ependymin-like 2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-091204-250
    See related
    Ensembl:ENSDARG00000055539 AllianceGenome:ZFIN:ZDB-GENE-091204-250
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:dkey-270m17.5
    Summary
    Predicted to enable calcium ion binding activity. Predicted to act upstream of or within cell-matrix adhesion. Predicted to be located in extracellular region. Predicted to be active in lysosome. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See epdl2 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (28513057..28523502, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (28476362..28488030, complement)

    Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase subunit 8A Neighboring gene OTU deubiquitinase, ubiquitin aldehyde binding 1a Neighboring gene neuregulin 2a Neighboring gene zgc:100829 Neighboring gene purine-rich element binding protein Aa

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell-matrix adhesion IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in lysosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007132.7 Reference GRCz11 Primary Assembly

      Range
      28513057..28523502 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_680487.8XP_685579.4  ependymin

      UniProtKB/TrEMBL
      A0A8N7UUQ0, F1R8R9
      Related
      ENSDARP00000072376.5, ENSDART00000077910.7
      Conserved Domains (1) summary
      pfam00811
      Location:69193
      Ependymin; Ependymin