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    C330002G04Rik RIKEN cDNA C330002G04 gene [ Mus musculus (house mouse) ]

    Gene ID: 77610, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C330002G04Rikprovided by MGI
    Official Full Name
    RIKEN cDNA C330002G04 geneprovided by MGI
    Primary source
    MGI:MGI:1924860
    See related
    Ensembl:ENSMUSG00000097930 AllianceGenome:MGI:1924860
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Is expressed in choroid plexus; cochlea; and inner ear vestibular component. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See C330002G04Rik in Genome Data Viewer
    Location:
    19 B; 19 17.72 cM
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (22956111..23053270, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (22978747..23075906, complement)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene transient receptor potential cation channel, subfamily M, member 3 Neighboring gene predicted gene, 54055 Neighboring gene STARR-seq mESC enhancer starr_45746 Neighboring gene microRNA 204 Neighboring gene STARR-seq mESC enhancer starr_45752 Neighboring gene STARR-seq mESC enhancer starr_45755 Neighboring gene STARR-seq mESC enhancer starr_45757 Neighboring gene STARR-seq mESC enhancer starr_45759 Neighboring gene STARR-seq mESC enhancer starr_45760 Neighboring gene RIKEN cDNA 2410080I02 gene Neighboring gene STARR-seq mESC enhancer starr_45763 Neighboring gene STARR-positive B cell enhancer ABC_E4273 Neighboring gene microRNA 1192 Neighboring gene Kruppel-like transcription factor 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A novel view of the transcriptome revealed from gene trapping in mouse embryonic stem cells. Roma G, et al. Genome Res, 2007 Jul. PMID 17540781, Free PMC Article
    2. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
    3. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article
    4. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
    5. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      22956111..23053270 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001782629.2 RNA Sequence

    2. XR_001782628.2 RNA Sequence

    3. XR_001782626.2 RNA Sequence

    4. XR_001782634.2 RNA Sequence

    5. XR_001782633.2 RNA Sequence

    6. XR_001782625.2 RNA Sequence

    7. XR_001782631.2 RNA Sequence

      Related
      ENSMUST00000366836.1

    8. XR_001782627.2 RNA Sequence

    9. XR_001782635.3 RNA Sequence

    10. XR_001782630.3 RNA Sequence

    11. XR_001782632.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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