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    Gm15880 predicted gene 15880 [ Mus musculus (house mouse) ]

    Gene ID: 100504375, updated on 17-Aug-2024

    Summary

    Official Symbol
    Gm15880provided by MGI
    Official Full Name
    predicted gene 15880provided by MGI
    Primary source
    MGI:MGI:3802014
    See related
    Ensembl:ENSMUSG00000084821 AllianceGenome:MGI:3802014
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See Gm15880 in Genome Data Viewer
    Location:
    7 D2; 7 45.66 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (80285765..80294132)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (80636017..80644384)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene Bloom syndrome, RecQ like helicase Neighboring gene NADH:ubiquinone oxidoreductase subunit AB1b Neighboring gene STARR-positive B cell enhancer ABC_E874 Neighboring gene STARR-seq mESC enhancer starr_19330 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:87699700-87699906 Neighboring gene predicted gene, 42398 Neighboring gene STARR-seq mESC enhancer starr_19331 Neighboring gene CREB regulated transcription coactivator 3 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:87792406-87792515 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:87812125-87812234 Neighboring gene IQ motif containing GTPase activating protein 1 Neighboring gene STARR-positive B cell enhancer ABC_E6567 Neighboring gene STARR-seq mESC enhancer starr_19336 Neighboring gene predicted gene, 18392 Neighboring gene VISTA enhancer mm170 Neighboring gene STARR-positive B cell enhancer ABC_E10447 Neighboring gene STARR-seq mESC enhancer starr_19340 Neighboring gene STARR-positive B cell enhancer ABC_E11358 Neighboring gene STARR-seq mESC enhancer starr_19343 Neighboring gene STARR-positive B cell enhancer ABC_E552 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:88009760-88009913 Neighboring gene zinc finger and SCAN domain containing 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Clone Names

    • AC127594.2

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_040343.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC127594, BY749974
      Related
      ENSMUST00000142678.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      80285765..80294132
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)