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    RPS4Y2 ribosomal protein S4 Y-linked 2 [ Pongo abelii (Sumatran orangutan) ]

    Gene ID: 129053162, updated on 3-Dec-2024

    Summary

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    Gene symbol
    RPS4Y2
    Gene description
    ribosomal protein S4 Y-linked 2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pongo abelii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
    Orthologs
    human all
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    Genomic context

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    See RPS4Y2 in Genome Data Viewer
    Location:
    chromosome: Y
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) Y NC_072009.2 (10763556..10789820)
    RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) Y NC_072009.1 (10763479..10789746)

    Chromosome Y - NC_072009.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129053164 Neighboring gene F-box-like/WD repeat-containing protein TBL1Y Neighboring gene zinc finger protein 347-like Neighboring gene zinc finger protein 347-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small ribosomal subunit protein eS4, Y

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Genomic

    1. NC_072009.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

      Range
      10763556..10789820
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063721498.1 → XP_063577568.1  small ribosomal subunit protein eS4, Y isoform X1

      UniProtKB/TrEMBL
      A0A0A7RWC3

    2. XM_054545332.2 → XP_054401307.1  small ribosomal subunit protein eS4, Y isoform X4

      UniProtKB/TrEMBL
      A0A0A7RWC3

    3. XM_054545331.2 → XP_054401306.1  small ribosomal subunit protein eS4, Y isoform X2

      UniProtKB/TrEMBL
      A0A0A7RWC3

    4. XM_063721499.1 → XP_063577569.1  small ribosomal subunit protein eS4, Y isoform X3

      UniProtKB/TrEMBL
      A0A0A7RWC3
    Nucleotide Protein
    Heading Accession and Version

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