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    TNRC6C trinucleotide repeat containing adaptor 6C [ Pongo abelii (Sumatran orangutan) ]

    Gene ID: 100442985, updated on 26-Mar-2024

    Summary

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    Gene symbol
    TNRC6C
    Gene description
    trinucleotide repeat containing adaptor 6C
    Locus tag
    CR201_G0021490
    See related
    Ensembl:ENSPPYG00000008679
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pongo abelii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
    Orthologs
    human mouse all
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    Genomic context

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    See TNRC6C in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 19 NC_072004.2 (93389878..93540081)
    RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 17 NC_072002.1 (81857341..82006454)

    Chromosome 19 - NC_072004.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129051462 Neighboring gene uncharacterized LOC129051463 Neighboring gene uncharacterized LOC129051127 Neighboring gene U6 spliceosomal RNA Neighboring gene transmembrane channel like 6 Neighboring gene transmembrane channel like 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in miRNA-mediated post-transcriptional gene silencing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of nuclear-transcribed mRNA poly(A) tail shortening IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    trinucleotide repeat-containing gene 6C protein
    Names
    trinucleotide repeat containing 6C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Genomic

    1. NC_072004.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

      Range
      93389878..93540081
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054535782.2 → XP_054391757.2  trinucleotide repeat-containing gene 6C protein isoform X3

    2. XM_024234662.3 → XP_024090430.3  trinucleotide repeat-containing gene 6C protein isoform X3

    3. XM_054535784.2 → XP_054391759.2  trinucleotide repeat-containing gene 6C protein isoform X3

    4. XM_054535786.2 → XP_054391761.2  trinucleotide repeat-containing gene 6C protein isoform X3

    5. XM_063718294.1 → XP_063574364.1  trinucleotide repeat-containing gene 6C protein isoform X3

    6. XM_054535785.2 → XP_054391760.2  trinucleotide repeat-containing gene 6C protein isoform X3

    7. XM_054535790.2 → XP_054391765.2  trinucleotide repeat-containing gene 6C protein isoform X8

    8. XM_054535787.2 → XP_054391762.2  trinucleotide repeat-containing gene 6C protein isoform X4

    9. XM_063718295.1 → XP_063574365.1  trinucleotide repeat-containing gene 6C protein isoform X5

    10. XM_054535789.2 → XP_054391764.2  trinucleotide repeat-containing gene 6C protein isoform X7

    11. XM_054535788.2 → XP_054391763.2  trinucleotide repeat-containing gene 6C protein isoform X6

    12. XM_054535783.2 → XP_054391758.2  trinucleotide repeat-containing gene 6C protein isoform X3

    13. XM_054535780.2 → XP_054391755.2  trinucleotide repeat-containing gene 6C protein isoform X1

    14. XM_054535781.2 → XP_054391756.2  trinucleotide repeat-containing gene 6C protein isoform X2

    Nucleotide Protein
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