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    Ecm1 extracellular matrix protein 1 [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100721378, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Ecm1
    Gene description
    extracellular matrix protein 1
    See related
    Ensembl:ENSCPOG00000010599
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Ecm1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947484.1 (107413836..107419472)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176417.1 (11532032..11537786)

    NW_026947484.1Genomic Context describing neighboring genes Neighboring gene regulation of nuclear pre-mRNA domain containing 2 Neighboring gene threonyl-tRNA synthetase 2, mitochondrial Neighboring gene small nucleolar RNA SNORA51 Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of bone mineralization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in collagen-containing extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    extracellular matrix protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947484.1 Reference mCavPor4.1

      Range
      107413836..107419472
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003478885.5 → XP_003478933.1  extracellular matrix protein 1 isoform X1

      UniProtKB/TrEMBL
      H0VH95
      Related
      ENSCPOP00000009519.2
      Conserved Domains (1) summary
      pfam05782
      Location:5 → 562
      ECM1; Extracellular matrix protein 1 (ECM1)

    2. XM_013142953.3 → XP_012998407.1  extracellular matrix protein 1 isoform X2

      Conserved Domains (1) summary
      pfam05782
      Location:5 → 437
      ECM1; Extracellular matrix protein 1 (ECM1)
    Nucleotide Protein
    Heading Accession and Version

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