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    Ccdc163 coiled-coil domain containing 163 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 298442, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Ccdc163provided by RGD
    Official Full Name
    coiled-coil domain containing 163provided by RGD
    Primary source
    RGD:1564486
    See related
    EnsemblRapid:ENSRNOG00000022953 AllianceGenome:RGD:1564486
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human CCDC163 (CCDC163 homolog). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Testes (RPKM 107.2), Thymus (RPKM 35.9) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ccdc163 in Genome Data Viewer
    Location:
    5q35
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (135408981..135415574)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (130172014..130178934)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (135562034..135568067)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene aldo-keto reductase family 1 member A1 Neighboring gene uncharacterized LOC134486971 Neighboring gene peroxiredoxin 1 Neighboring gene metabolism of cobalamin associated C Neighboring gene testis associated actin remodelling kinase 2 Neighboring gene ribosomal protein S26 like 4 Neighboring gene target of EGR1, exonuclease Neighboring gene mutY DNA glycosylase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC114580

    General protein information

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    Preferred Names
    transmembrane protein CCDC163

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001025656.1 → NP_001020827.1  transmembrane protein CCDC163

      See identical proteins and their annotated locations for NP_001020827.1

      Status: PROVISIONAL

      Source sequence(s)
      BC098949
      UniProtKB/TrEMBL
      A0A8I6AJX6, Q4KLX9
      Related
      ENSRNOP00000053802.1, ENSRNOT00000056967.3
      Conserved Domains (1) summary
      TIGR02168
      Location:82 → 262
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      135408981..135415574
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063287414.1 → XP_063143484.1  transmembrane protein CCDC163 isoform X5

    2. XM_063287420.1 → XP_063143490.1  transmembrane protein CCDC163 isoform X12

    3. XM_063287418.1 → XP_063143488.1  transmembrane protein CCDC163 isoform X11

    4. XM_063287415.1 → XP_063143485.1  transmembrane protein CCDC163 isoform X6

      Related
      ENSRNOP00000078539.2, ENSRNOT00000107642.2

    5. XM_063287416.1 → XP_063143486.1  transmembrane protein CCDC163 isoform X9

    6. XM_063287421.1 → XP_063143491.1  transmembrane protein CCDC163 isoform X13

    7. XM_063287410.1 → XP_063143480.1  transmembrane protein CCDC163 isoform X1

    8. XM_063287412.1 → XP_063143482.1  transmembrane protein CCDC163 isoform X3

      UniProtKB/TrEMBL
      Q4KLX9

    9. XM_063287419.1 → XP_063143489.1  transmembrane protein CCDC163 isoform X11

    10. XM_063287413.1 → XP_063143483.1  transmembrane protein CCDC163 isoform X4

    11. XM_063287417.1 → XP_063143487.1  transmembrane protein CCDC163 isoform X10

    12. XM_008763995.4 → XP_008762217.1  transmembrane protein CCDC163 isoform X8

      UniProtKB/TrEMBL
      A0A8I6AJX6
      Related
      ENSRNOP00000093606.1, ENSRNOT00000119408.2
      Conserved Domains (1) summary
      TIGR02168
      Location:82 → 262
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    13. XM_006238649.5 → XP_006238711.1  transmembrane protein CCDC163 isoform X6

      UniProtKB/TrEMBL
      A0A8I5ZL67
      Conserved Domains (1) summary
      TIGR02168
      Location:48 → 228
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    14. XM_039109602.2 → XP_038965530.1  transmembrane protein CCDC163 isoform X13

      UniProtKB/TrEMBL
      A0A8I6ADY7
      Related
      ENSRNOP00000092447.1, ENSRNOT00000094697.2
      Conserved Domains (1) summary
      TIGR02168
      Location:48 → 228
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    15. XM_063287411.1 → XP_063143481.1  transmembrane protein CCDC163 isoform X2

    16. XM_006238650.5 → XP_006238712.1  transmembrane protein CCDC163 isoform X7

      UniProtKB/TrEMBL
      A0A8I5ZL67
      Conserved Domains (1) summary
      TIGR02168
      Location:47 → 227
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    17. XM_063287422.1 → XP_063143492.1  transmembrane protein CCDC163 isoform X14

    Nucleotide Protein Strain
    Heading Accession and Version

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