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    Chd3 chromodomain helicase DNA binding protein 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 303241, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Chd3provided by RGD
    Official Full Name
    chromodomain helicase DNA binding protein 3provided by RGD
    Primary source
    RGD:1311923
    See related
    EnsemblRapid:ENSRNOG00000009722 AllianceGenome:RGD:1311923
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable several functions, including ATP hydrolysis activity; ATP-dependent chromatin remodeler activity; and histone binding activity. Predicted to be involved in chromatin remodeling; microtubule cytoskeleton organization; and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within chromatin organization. Predicted to be located in several cellular components, including centriolar satellite; chromatin; and nuclear lumen. Predicted to be part of NuRD complex. Predicted to be active in nucleus. Biomarker of pancreatic carcinoma. Orthologous to human CHD3 (chromodomain helicase DNA binding protein 3). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Thymus (RPKM 268.4), Brain (RPKM 189.0) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Chd3 in Genome Data Viewer
    Location:
    10q24
    Exon count:
    41
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (54562437..54588842, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (54063629..54090030, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (55943467..55970417, complement)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel subfamily A regulatory beta subunit 3 Neighboring gene ring finger protein 227 Neighboring gene small Cajal body-specific RNA 21 Neighboring gene N(alpha)-acetyltransferase 38, NatC auxiliary subunit Neighboring gene cytochrome b5 domain containing 1 Neighboring gene transmembrane protein 88

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. CHD3 helicase domain mutations cause a neurodevelopmental syndrome with macrocephaly and impaired speech and language. Snijders Blok L, et al. Nat Commun, 2018 Nov 5. PMID 30397230, Free PMC Article
    2. Proteomic analysis of pancreatic intraepithelial neoplasia and pancreatic carcinoma in rat models. Wang L, et al. World J Gastroenterol, 2011 Mar 21. PMID 21472101, Free PMC Article
    3. Rat hd mutation reveals an essential role of centrobin in spermatid head shaping and assembly of the head-tail coupling apparatus. Liska F, et al. Biol Reprod, 2009 Dec. PMID 19710508, Free PMC Article
    4. Chromatin remodeling proteins interact with pericentrin to regulate centrosome integrity. Sillibourne JE, et al. Mol Biol Cell, 2007 Sep. PMID 17626165, Free PMC Article
    5. The nucleosome remodeling and deacetylase complex in development and disease. Basta J, et al. Transl Res, 2015 Jan. PMID 24880148, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP hydrolysis activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables ATP hydrolysis activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables ATP-dependent chromatin remodeler activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables ATP-dependent chromatin remodeler activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables chromatin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables double-stranded DNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables forked DNA-dependent helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables four-way junction helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables histone binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables single-stranded 3'-5' DNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transcription cis-regulatory region binding ISO
    Inferred from Sequence Orthology
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA duplex unwinding IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in centrosome cycle ISO
    Inferred from Sequence Orthology
    more info
    		  
    acts_upstream_of_or_within chromatin organization ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in chromatin remodeling IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in chromatin remodeling ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in negative regulation of transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in spindle organization ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    part_of NuRD complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of NuRD complex ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in PML body ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in centriolar satellite IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in centriolar satellite ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in centrosome ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in chromatin IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    chromodomain-helicase-DNA-binding protein 3
    NP_001406850.1
    XP_038943541.1
    XP_038943542.1
    XP_038943543.1
    XP_038943544.1
    XP_038943545.1
    XP_038943546.1
    XP_038943547.1
    XP_038943548.1
    XP_038943551.1
    XP_038943554.1
    XP_063125098.1
    XP_063125099.1
    XP_063125100.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419921.1 → NP_001406850.1  chromodomain-helicase-DNA-binding protein 3

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010
      UniProtKB/TrEMBL
      Q2KMK7
      Related
      ENSRNOP00000053890.6, ENSRNOT00000057058.6

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      54562437..54588842 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039087615.2 → XP_038943543.1  chromodomain-helicase-DNA-binding protein 3 isoform X3

      UniProtKB/TrEMBL
      A0A8I6GIY0
      Conserved Domains (12) summary
      PLN03142
      Location:779 → 1333
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      PHA03169
      Location:1569 → 1760
      PHA03169; hypothetical protein; Provisional
      COG5034
      Location:383 → 487
      TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
      cd15531
      Location:442 → 484
      PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd15532
      Location:518 → 560
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd18662
      Location:688 → 742
      CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18667
      Location:565 → 643
      CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18055
      Location:796 → 1027
      DEXHc_CHD3; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 3
      pfam06461
      Location:1438 → 1577
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam06465
      Location:1374 → 1417
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08073
      Location:202 → 255
      CHDNT; CHDNT (NUC034) domain
      pfam08074
      Location:1798 → 1924
      CHDCT2; CHDCT2 (NUC038) domain

    2. XM_039087617.2 → XP_038943545.1  chromodomain-helicase-DNA-binding protein 3 isoform X5

      UniProtKB/TrEMBL
      A0A8I6GIY0
      Conserved Domains (12) summary
      PLN03142
      Location:768 → 1322
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      PHA03169
      Location:1558 → 1749
      PHA03169; hypothetical protein; Provisional
      COG5034
      Location:380 → 476
      TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
      cd15531
      Location:431 → 473
      PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd15532
      Location:507 → 549
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd18662
      Location:677 → 731
      CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18667
      Location:554 → 632
      CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18055
      Location:785 → 1016
      DEXHc_CHD3; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 3
      pfam06461
      Location:1427 → 1566
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam06465
      Location:1363 → 1406
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08073
      Location:203 → 256
      CHDNT; CHDNT (NUC034) domain
      pfam08074
      Location:1787 → 1913
      CHDCT2; CHDCT2 (NUC038) domain

    3. XM_039087618.2 → XP_038943546.1  chromodomain-helicase-DNA-binding protein 3 isoform X6

      UniProtKB/TrEMBL
      A0A8I6GIY0
      Conserved Domains (12) summary
      PLN03142
      Location:780 → 1334
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      PHA03169
      Location:1570 → 1721
      PHA03169; hypothetical protein; Provisional
      COG5034
      Location:384 → 488
      TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
      cd15531
      Location:443 → 485
      PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd15532
      Location:519 → 561
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd18662
      Location:689 → 743
      CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18667
      Location:566 → 644
      CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18055
      Location:797 → 1028
      DEXHc_CHD3; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 3
      pfam06461
      Location:1439 → 1578
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam06465
      Location:1375 → 1418
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08073
      Location:203 → 256
      CHDNT; CHDNT (NUC034) domain
      pfam08074
      Location:1764 → 1890
      CHDCT2; CHDCT2 (NUC038) domain

    4. XM_039087614.2 → XP_038943542.1  chromodomain-helicase-DNA-binding protein 3 isoform X2

      UniProtKB/TrEMBL
      A0A8I6GIY0
      Conserved Domains (12) summary
      PLN03142
      Location:780 → 1334
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      PHA03169
      Location:1570 → 1755
      PHA03169; hypothetical protein; Provisional
      COG5034
      Location:384 → 488
      TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
      cd15531
      Location:443 → 485
      PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd15532
      Location:519 → 561
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd18662
      Location:689 → 743
      CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18667
      Location:566 → 644
      CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18055
      Location:797 → 1028
      DEXHc_CHD3; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 3
      pfam06461
      Location:1439 → 1578
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam06465
      Location:1375 → 1418
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08073
      Location:203 → 256
      CHDNT; CHDNT (NUC034) domain
      pfam08074
      Location:1798 → 1924
      CHDCT2; CHDCT2 (NUC038) domain

    5. XM_039087613.2 → XP_038943541.1  chromodomain-helicase-DNA-binding protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A8I6GIY0
      Conserved Domains (12) summary
      PLN03142
      Location:780 → 1334
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      PHA03169
      Location:1570 → 1761
      PHA03169; hypothetical protein; Provisional
      COG5034
      Location:384 → 488
      TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
      cd15531
      Location:443 → 485
      PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd15532
      Location:519 → 561
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd18662
      Location:689 → 743
      CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18667
      Location:566 → 644
      CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18055
      Location:797 → 1028
      DEXHc_CHD3; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 3
      pfam06461
      Location:1439 → 1578
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam06465
      Location:1375 → 1418
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08073
      Location:203 → 256
      CHDNT; CHDNT (NUC034) domain
      pfam08074
      Location:1799 → 1925
      CHDCT2; CHDCT2 (NUC038) domain

    6. XM_039087626.2 → XP_038943554.1  chromodomain-helicase-DNA-binding protein 3 isoform X13

      UniProtKB/TrEMBL
      Q2KMK7
      Conserved Domains (12) summary
      PLN03142
      Location:779 → 1333
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      PHA03169
      Location:1569 → 1760
      PHA03169; hypothetical protein; Provisional
      COG5034
      Location:383 → 487
      TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
      cd15531
      Location:442 → 484
      PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd15532
      Location:518 → 560
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd18662
      Location:688 → 742
      CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18667
      Location:565 → 643
      CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18055
      Location:796 → 1027
      DEXHc_CHD3; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 3
      pfam06461
      Location:1438 → 1577
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam06465
      Location:1374 → 1417
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08073
      Location:202 → 255
      CHDNT; CHDNT (NUC034) domain
      pfam08074
      Location:1798 → 1924
      CHDCT2; CHDCT2 (NUC038) domain

    7. XM_039087616.2 → XP_038943544.1  chromodomain-helicase-DNA-binding protein 3 isoform X4

      UniProtKB/TrEMBL
      A0A8I6GIY0
      Related
      ENSRNOP00000090517.1, ENSRNOT00000114886.2
      Conserved Domains (12) summary
      PLN03142
      Location:774 → 1328
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      PHA03169
      Location:1564 → 1755
      PHA03169; hypothetical protein; Provisional
      COG5034
      Location:380 → 482
      TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
      cd15531
      Location:437 → 479
      PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd15532
      Location:513 → 555
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd18662
      Location:683 → 737
      CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18667
      Location:560 → 638
      CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18055
      Location:791 → 1022
      DEXHc_CHD3; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 3
      pfam06461
      Location:1433 → 1572
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam06465
      Location:1369 → 1412
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08073
      Location:203 → 256
      CHDNT; CHDNT (NUC034) domain
      pfam08074
      Location:1793 → 1919
      CHDCT2; CHDCT2 (NUC038) domain

    8. XM_063269029.1 → XP_063125099.1  chromodomain-helicase-DNA-binding protein 3 isoform X10

      UniProtKB/TrEMBL
      Q2KMK9

    9. XM_039087620.2 → XP_038943548.1  chromodomain-helicase-DNA-binding protein 3 isoform X8

      UniProtKB/TrEMBL
      Q2KMK7
      Conserved Domains (12) summary
      PLN03142
      Location:780 → 1334
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      PHA03169
      Location:1570 → 1755
      PHA03169; hypothetical protein; Provisional
      COG5034
      Location:384 → 488
      TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
      cd15531
      Location:443 → 485
      PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd15532
      Location:519 → 561
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd18662
      Location:689 → 743
      CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18667
      Location:566 → 644
      CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18055
      Location:797 → 1028
      DEXHc_CHD3; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 3
      pfam06461
      Location:1439 → 1578
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam06465
      Location:1375 → 1418
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08073
      Location:203 → 256
      CHDNT; CHDNT (NUC034) domain
      pfam08074
      Location:1798 → 1924
      CHDCT2; CHDCT2 (NUC038) domain

    10. XM_039087619.2 → XP_038943547.1  chromodomain-helicase-DNA-binding protein 3 isoform X7

      UniProtKB/TrEMBL
      Q2KMK7
      Conserved Domains (12) summary
      PLN03142
      Location:780 → 1334
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      PHA03169
      Location:1570 → 1761
      PHA03169; hypothetical protein; Provisional
      COG5034
      Location:384 → 488
      TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
      cd15531
      Location:443 → 485
      PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd15532
      Location:519 → 561
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd18662
      Location:689 → 743
      CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18667
      Location:566 → 644
      CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18055
      Location:797 → 1028
      DEXHc_CHD3; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 3
      pfam06461
      Location:1439 → 1578
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam06465
      Location:1375 → 1418
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08073
      Location:203 → 256
      CHDNT; CHDNT (NUC034) domain
      pfam08074
      Location:1799 → 1925
      CHDCT2; CHDCT2 (NUC038) domain

    11. XM_039087623.2 → XP_038943551.1  chromodomain-helicase-DNA-binding protein 3 isoform X11

      UniProtKB/TrEMBL
      A0A8I6AF31, Q2KMK9
      Related
      ENSRNOP00000091170.1, ENSRNOT00000099449.2
      Conserved Domains (12) summary
      PLN03142
      Location:774 → 1328
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      PHA03169
      Location:1564 → 1715
      PHA03169; hypothetical protein; Provisional
      COG5034
      Location:380 → 482
      TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
      cd15531
      Location:437 → 479
      PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd15532
      Location:513 → 555
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd18662
      Location:683 → 737
      CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18667
      Location:560 → 638
      CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18055
      Location:791 → 1022
      DEXHc_CHD3; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 3
      pfam06461
      Location:1433 → 1572
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam06465
      Location:1369 → 1412
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08073
      Location:203 → 256
      CHDNT; CHDNT (NUC034) domain
      pfam08074
      Location:1758 → 1884
      CHDCT2; CHDCT2 (NUC038) domain

    12. XM_063269028.1 → XP_063125098.1  chromodomain-helicase-DNA-binding protein 3 isoform X9

      UniProtKB/TrEMBL
      Q2KMK7

    13. XM_063269030.1 → XP_063125100.1  chromodomain-helicase-DNA-binding protein 3 isoform X12

      UniProtKB/TrEMBL
      F1LPP8
    Nucleotide Protein Strain
    Heading Accession and Version

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