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    LOC127132600 stachyose synthase [ Pisum sativum (garden pea) ]

    Gene ID: 127132600, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC127132600
    Gene description
    stachyose synthase
    Locus tag
    KIW84_030884
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Pisum sativum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Fabeae; Pisum
    Also known as
    sts1
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    Genomic context

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    See LOC127132600 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    100 current CAAS_Psat_ZW6_1.0 (GCF_024323335.1) 3 NC_066581.1 (69321543..69324701, complement)

    Chromosome 3 - NC_066581.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC127128921 Neighboring gene uncharacterized LOC127132599 Neighboring gene small nucleolar RNA R71 Neighboring gene glycine-rich cell wall structural protein 1.8-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_066581.1 Chromosome 3 Reference CAAS_Psat_ZW6_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Chain Elongation of raffinose in pea seeds. Isolation, characterization, and molecular cloning of mutifunctional enzyme catalyzing the synthesis of stachyose and verbascose. Peterbauer T, et al. J Biol Chem, 2002 Jan 4. PMID 11675396
    2. De Novo Assembly of the Pea (Pisum sativum L.) Nodule Transcriptome. Zhukov VA, et al. Int J Genomics, 2015. PMID 26688806, Free PMC Article
    3. De novo assembly and characterisation of the field pea transcriptome using RNA-Seq. Sudheesh S, et al. BMC Genomics, 2015 Aug 16. PMID 26275991, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    stachyose synthase
    Names
    Galactinol--raffinose galactosyltransferase
    Tethering factor for nuclear proteasome sts1
    XP_050917513.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001427725.1 → NP_001414654.1  stachyose synthase

      Status: VALIDATED

      Source sequence(s)
      AJ311087, GCMF01002922, GDTM01024274
      UniProtKB/Swiss-Prot
      Q8H0M9, Q93XK2
      UniProtKB/TrEMBL
      A0A9D5AZK5

    RefSeqs of Annotated Genomes: Pisum sativum Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Psat_ZW6_1.0

    Genomic

    1. NC_066581.1 Reference CAAS_Psat_ZW6_1.0

      Range
      69321543..69324701 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_051061556.1 → XP_050917513.1  stachyose synthase

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93XK2.1 GenPept UniProtKB/Swiss-Prot:Q93XK2

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