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    ZC3H11A zinc finger CCCH-type containing 11A [ Bos taurus (domestic cattle) ]

    Gene ID: 529699, updated on 1-Jan-2025

    Summary

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    Gene symbol
    ZC3H11A
    Gene description
    zinc finger CCCH-type containing 11A
    See related
    BGD:BT16035; Ensembl:ENSBTAG00000017352
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
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    Genomic context

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    See ZC3H11A in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 16 NC_037343.1 (1581557..1625418)

    Chromosome 16 - NC_037343.1Genomic Context describing neighboring genes Neighboring gene ATPase plasma membrane Ca2+ transporting 4 Neighboring gene uncharacterized LOC132342430 Neighboring gene lymphocyte transmembrane adaptor 1 Neighboring gene uncharacterized LOC132342431 Neighboring gene small nuclear ribonucleoprotein polypeptide E Neighboring gene uncharacterized LOC104974354

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037343.1 Chromosome 16 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC142959

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in poly(A)+ mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger CCCH domain-containing protein 11A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001099947.2 → NP_001093417.2  zinc finger CCCH domain-containing protein 11A

      See identical proteins and their annotated locations for NP_001093417.2

      Status: PROVISIONAL

      Source sequence(s)
      BC142497
      UniProtKB/TrEMBL
      A5PKI2, F6QB05
      Conserved Domains (1) summary
      pfam15663
      Location:1 → 110
      zf-CCCH_3; Zinc-finger containing family

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037343.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      1581557..1625418
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059875415.1 → XP_059731398.1  zinc finger CCCH domain-containing protein 11A isoform X2

      UniProtKB/TrEMBL
      A5PKI2, F6QB05

    2. XM_059875418.1 → XP_059731401.1  zinc finger CCCH domain-containing protein 11A isoform X2

      UniProtKB/TrEMBL
      A5PKI2, F6QB05

    3. XM_059875416.1 → XP_059731399.1  zinc finger CCCH domain-containing protein 11A isoform X2

      UniProtKB/TrEMBL
      A5PKI2, F6QB05

    4. XM_024976287.2 → XP_024832055.1  zinc finger CCCH domain-containing protein 11A isoform X2

      UniProtKB/TrEMBL
      A5PKI2, F6QB05
      Conserved Domains (1) summary
      pfam15663
      Location:1 → 110
      zf-CCCH_3; Zinc-finger containing family

    5. XM_024976292.2 → XP_024832060.1  zinc finger CCCH domain-containing protein 11A isoform X2

      UniProtKB/TrEMBL
      A5PKI2, F6QB05
      Conserved Domains (1) summary
      pfam15663
      Location:1 → 110
      zf-CCCH_3; Zinc-finger containing family

    6. XM_024976290.2 → XP_024832058.1  zinc finger CCCH domain-containing protein 11A isoform X2

      UniProtKB/TrEMBL
      A5PKI2, F6QB05
      Conserved Domains (1) summary
      pfam15663
      Location:1 → 110
      zf-CCCH_3; Zinc-finger containing family

    7. XM_024976289.2 → XP_024832057.1  zinc finger CCCH domain-containing protein 11A isoform X2

      UniProtKB/TrEMBL
      A5PKI2, F6QB05
      Conserved Domains (1) summary
      pfam15663
      Location:1 → 110
      zf-CCCH_3; Zinc-finger containing family

    8. XM_024976295.2 → XP_024832063.1  zinc finger CCCH domain-containing protein 11A isoform X2

      UniProtKB/TrEMBL
      A5PKI2, F6QB05
      Conserved Domains (1) summary
      pfam15663
      Location:1 → 110
      zf-CCCH_3; Zinc-finger containing family

    9. XM_024976291.2 → XP_024832059.1  zinc finger CCCH domain-containing protein 11A isoform X2

      UniProtKB/TrEMBL
      A5PKI2, F6QB05
      Conserved Domains (1) summary
      pfam15663
      Location:1 → 110
      zf-CCCH_3; Zinc-finger containing family

    10. XM_024976300.2 → XP_024832068.1  zinc finger CCCH domain-containing protein 11A isoform X2

      UniProtKB/TrEMBL
      A5PKI2, F6QB05
      Conserved Domains (1) summary
      pfam15663
      Location:1 → 110
      zf-CCCH_3; Zinc-finger containing family

    11. XM_059875417.1 → XP_059731400.1  zinc finger CCCH domain-containing protein 11A isoform X2

      UniProtKB/TrEMBL
      A5PKI2, F6QB05

    12. XM_024976297.2 → XP_024832065.1  zinc finger CCCH domain-containing protein 11A isoform X2

      UniProtKB/TrEMBL
      A5PKI2, F6QB05
      Conserved Domains (1) summary
      pfam15663
      Location:1 → 110
      zf-CCCH_3; Zinc-finger containing family

    13. XM_024976302.2 → XP_024832070.1  zinc finger CCCH domain-containing protein 11A isoform X2

      UniProtKB/TrEMBL
      A5PKI2, F6QB05
      Conserved Domains (1) summary
      pfam15663
      Location:1 → 110
      zf-CCCH_3; Zinc-finger containing family

    14. XM_059875421.1 → XP_059731404.1  zinc finger CCCH domain-containing protein 11A isoform X2

      UniProtKB/TrEMBL
      A5PKI2, F6QB05

    15. XM_024976288.2 → XP_024832056.1  zinc finger CCCH domain-containing protein 11A isoform X2

      UniProtKB/TrEMBL
      A5PKI2, F6QB05
      Conserved Domains (1) summary
      pfam15663
      Location:1 → 110
      zf-CCCH_3; Zinc-finger containing family

    16. XM_024976294.2 → XP_024832062.1  zinc finger CCCH domain-containing protein 11A isoform X2

      UniProtKB/TrEMBL
      A5PKI2, F6QB05
      Conserved Domains (1) summary
      pfam15663
      Location:1 → 110
      zf-CCCH_3; Zinc-finger containing family

    17. XM_024976293.2 → XP_024832061.1  zinc finger CCCH domain-containing protein 11A isoform X2

      UniProtKB/TrEMBL
      A5PKI2, F6QB05
      Conserved Domains (1) summary
      pfam15663
      Location:1 → 110
      zf-CCCH_3; Zinc-finger containing family

    18. XM_024976296.2 → XP_024832064.1  zinc finger CCCH domain-containing protein 11A isoform X2

      UniProtKB/TrEMBL
      A5PKI2, F6QB05
      Conserved Domains (1) summary
      pfam15663
      Location:1 → 110
      zf-CCCH_3; Zinc-finger containing family

    19. XM_059875420.1 → XP_059731403.1  zinc finger CCCH domain-containing protein 11A isoform X2

      UniProtKB/TrEMBL
      A5PKI2, F6QB05

    20. XM_059875419.1 → XP_059731402.1  zinc finger CCCH domain-containing protein 11A isoform X2

      UniProtKB/TrEMBL
      A5PKI2, F6QB05

    21. XM_024976303.2 → XP_024832071.1  zinc finger CCCH domain-containing protein 11A isoform X2

      UniProtKB/TrEMBL
      A5PKI2, F6QB05
      Conserved Domains (1) summary
      pfam15663
      Location:1 → 110
      zf-CCCH_3; Zinc-finger containing family

    22. XM_059875413.1 → XP_059731396.1  zinc finger CCCH domain-containing protein 11A isoform X1

      UniProtKB/TrEMBL
      A0AAF6DLG8
      Related
      ENSBTAP00000023068.7, ENSBTAT00000023068.7

    23. XM_059875414.1 → XP_059731397.1  zinc finger CCCH domain-containing protein 11A isoform X1

      UniProtKB/TrEMBL
      A0AAF6DLG8

    RNA

    1. XR_009490758.1 RNA Sequence

    2. XR_009490756.1 RNA Sequence

    3. XR_009490757.1 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001032302.1: Suppressed sequence

      Description
      NM_001032302.1: This RefSeq was permanently suppressed because it is primarily UTR sequence.
    Nucleotide Protein Strain
    Heading Accession and Version

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