U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    LOC100241975 cyclin-L1-1 [ Vitis vinifera (wine grape) ]

    Gene ID: 100241975, updated on 23-Oct-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC100241975
    Gene description
    cyclin-L1-1
    Locus tag
    VIT_00020870001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC100241975 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 12 NC_081816.1 (782186..795544, complement)
    102 previous assembly 12X (GCF_000003745.3) 12 NC_012018.3 (758576..771994, complement)

    Chromosome 12 - NC_081816.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At1g79490, mitochondrial Neighboring gene formin-like protein 20 Neighboring gene two-pore potassium channel 3 Neighboring gene two-pore potassium channel 3

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times. Zeng L, et al. Nat Commun, 2014 Sep 24. PMID 25249442, Free PMC Article
    2. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    3. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
    4. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cyclin-dependent protein serine/threonine kinase regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    cyclin-L1-1
    Names
    arginine-rich cyclin 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081816.1 Reference ASM3070453v1 Primary Assembly

      Range
      782186..795544 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059741141.1 → XP_059597124.1  cyclin-L1-1

    2. XM_059741139.1 → XP_059597122.1  cyclin-L1-1

    3. XM_010658829.3 → XP_010657131.1  cyclin-L1-1

      See identical proteins and their annotated locations for XP_010657131.1

      Conserved Domains (2) summary
      smart00385
      Location:156 → 241
      CYCLIN; domain present in cyclins, TFIIB and Retinoblastoma
      cd00043
      Location:34 → 109
      CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...

    4. XM_010658827.3 → XP_010657129.1  cyclin-L1-1

      See identical proteins and their annotated locations for XP_010657129.1

      Conserved Domains (2) summary
      smart00385
      Location:156 → 241
      CYCLIN; domain present in cyclins, TFIIB and Retinoblastoma
      cd00043
      Location:34 → 109
      CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...

    5. XM_010658831.3 → XP_010657133.1  cyclin-L1-1

      See identical proteins and their annotated locations for XP_010657133.1

      Conserved Domains (2) summary
      smart00385
      Location:156 → 241
      CYCLIN; domain present in cyclins, TFIIB and Retinoblastoma
      cd00043
      Location:34 → 109
      CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...

    6. XM_059741140.1 → XP_059597123.1  cyclin-L1-1

    7. XM_010658830.3 → XP_010657132.1  cyclin-L1-1

      See identical proteins and their annotated locations for XP_010657132.1

      Conserved Domains (2) summary
      smart00385
      Location:156 → 241
      CYCLIN; domain present in cyclins, TFIIB and Retinoblastoma
      cd00043
      Location:34 → 109
      CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...

    8. XM_019223567.2 → XP_019079112.1  cyclin-L1-1

    9. XM_019223568.2 → XP_019079113.1  cyclin-L1-1

    10. XM_010658828.3 → XP_010657130.1  cyclin-L1-1

      See identical proteins and their annotated locations for XP_010657130.1

      Conserved Domains (2) summary
      smart00385
      Location:156 → 241
      CYCLIN; domain present in cyclins, TFIIB and Retinoblastoma
      cd00043
      Location:34 → 109
      CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...

    11. XM_019223566.2 → XP_019079111.1  cyclin-L1-1

    12. XM_059741138.1 → XP_059597121.1  cyclin-L1-1

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials