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    TBL41 TRICHOME BIREFRINGENCE-LIKE 41 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820714, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TBL41
    Official Full Name
    TRICHOME BIREFRINGENCE-LIKE 41
    Primary source
    TAIR:AT3G14850
    Locus tag
    AT3G14850
    See related
    Araport:AT3G14850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    TRICHOME BIREFRINGENCE-LIKE 41
    Summary
    Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
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    Genomic context

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    See TBL41 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (4995426..4997785)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene epstein-barr nuclear antigen Neighboring gene Leucine-rich repeat transmembrane protein kinase Neighboring gene tRNA-Cys Neighboring gene NHL domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_112347.4
    NM_202585.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables O-acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TRICHOME BIREFRINGENCE-LIKE 41
    NP_188103.2
    • TRICHOME BIREFRINGENCE-LIKE 41 (TBL41); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 38 (TAIR:AT1G29050.1); Has 1268 Blast hits to 1259 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1266; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_974314.2
    • TRICHOME BIREFRINGENCE-LIKE 41 (TBL41); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 38 (TAIR:AT1G29050.1); Has 1339 Blast hits to 1315 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1337; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4995426..4997785
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202585.3 → NP_974314.2  TRICHOME BIREFRINGENCE-LIKE 41 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974314.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DI65, F4IWA8, Q8W4B3, Q9LH70
      UniProtKB/TrEMBL
      A0A178VJP5, A0A5S9XCE2, A0A654F7A0
      Conserved Domains (1) summary
      PLN02629
      Location:34 → 351
      PLN02629; powdery mildew resistance 5

    2. NM_112347.4 → NP_188103.2  TRICHOME BIREFRINGENCE-LIKE 41 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188103.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IWA8
      Conserved Domains (1) summary
      pfam13839
      Location:1 → 252
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4IWA8.1

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