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    A630001G21Rik RIKEN cDNA A630001G21 gene [ Mus musculus (house mouse) ]

    Gene ID: 319997, updated on 27-Nov-2024

    Summary

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    Official Symbol
    A630001G21Rikprovided by MGI
    Official Full Name
    RIKEN cDNA A630001G21 geneprovided by MGI
    Primary source
    MGI:MGI:2443131
    See related
    Ensembl:ENSMUSG00000052760 AllianceGenome:MGI:2443131
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in genitourinary system. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in spleen adult (RPKM 5.4), thymus adult (RPKM 3.2) and 15 other tissues See more
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    Genomic context

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    See A630001G21Rik in Genome Data Viewer
    Location:
    1 C5; 1 43.75 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (85644804..85664377, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (85717083..85736656, complement)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene Sp110 nuclear body protein Neighboring gene Sp140 nuclear body protein Neighboring gene STARR-seq mESC enhancer starr_01550 Neighboring gene STARR-seq mESC enhancer starr_01551 Neighboring gene nuclear antigen Sp100 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:87584047-87584232 Neighboring gene STARR-positive B cell enhancer ABC_E1221 Neighboring gene STARR-positive B cell enhancer ABC_E323 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:87629249-87629446 Neighboring gene STARR-positive B cell enhancer ABC_E1551 Neighboring gene STARR-positive B cell enhancer ABC_E1999 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:87647325-87647478 Neighboring gene STARR-seq mESC enhancer starr_01553 Neighboring gene RIKEN cDNA 9930111H07 gene Neighboring gene microRNA 8096 Neighboring gene calcium binding protein 39

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
    2. GUDMAP: the genitourinary developmental molecular anatomy project. McMahon AP, et al. J Am Soc Nephrol, 2008 Apr. PMID 18287559
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC319997

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_177055.3 → NP_796029.2  uncharacterized protein LOC319997

      See identical proteins and their annotated locations for NP_796029.2

      Status: VALIDATED

      Source sequence(s)
      AA289536, AK041675, BB871611, BG276509
      Consensus CDS
      CCDS48299.1
      UniProtKB/TrEMBL
      Q3UTB2, Q7TSS9
      Related
      ENSMUSP00000070374.8, ENSMUST00000064788.14
      Conserved Domains (1) summary
      pfam03172
      Location:11 → 106
      HSR; HSR domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      85644804..85664377 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036165695.1 → XP_036021588.1  uncharacterized protein LOC319997 isoform X3

    2. XM_011248033.1 → XP_011246335.1  uncharacterized protein LOC319997 isoform X1

      See identical proteins and their annotated locations for XP_011246335.1

      UniProtKB/TrEMBL
      Q3UTB2, Q7TSS9
      Conserved Domains (1) summary
      pfam03172
      Location:11 → 106
      HSR; HSR domain

    3. XM_017321191.1 → XP_017176680.1  uncharacterized protein LOC319997 isoform X2

      UniProtKB/TrEMBL
      Q7TSS9
      Conserved Domains (1) summary
      pfam03172
      Location:11 → 106
      HSR; HSR domain

    4. XM_011248032.1 → XP_011246334.1  uncharacterized protein LOC319997 isoform X1

      See identical proteins and their annotated locations for XP_011246334.1

      UniProtKB/TrEMBL
      Q3UTB2, Q7TSS9
      Conserved Domains (1) summary
      pfam03172
      Location:11 → 106
      HSR; HSR domain
    Nucleotide Protein Strain
    Heading Accession and Version

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